RNA id: TCONS_00075169


Basic Information

Item Value
RNA id TCONS_00075169
length 886
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id XLOC_037301
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 35160644 ~ 35167934 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAAGCTGCAGCCAACAATAAACGCGTGGTTCATATTTAGGTGCTTTAGACAATAGAACTTTTGAAAAGACCACGTAGAAACATTGTTTCAGCGTTCAATATGAAAAATATCAAATGGTGAGGTAAAATAAAGCGCGCCTTATCGCAGGTGAGGAGGTGCACCAAGCAAACCATGGCATCATGGGAGATTCTGAGAGCGGGCAGATTAGGAAGGAGGAGCACCTGCCAACAGGCTTACCGCAGGATTTGCTCACTGAAGTCTGCAAGGAATCCTGCAACGCTTCACATTTTCACCGCTTAAAGAGTAAAATCAGACCCATTTAGGAAAACCTGAGAGGGTTGAGTGAATTGTTTAGGCAAGCGCAGTTGGGCAGTCATAATCTGCTGCGTTCACCCTGATTACAGCCCAAGTGTGTTCAGCGTATAGTTGAGGCCAAGGACACTAATGCCCAGGTGAGTGTGAACTACAGCTCCAGTACTTACACTTGAAGGTGCAGGACACAGCAGGACCCCCGAAGGAAACATGGATGGTTTCTTTCCAACGAGCGCAGGCAACAGATTTTCACAGGTCACCGGCTCCAGGACAAGGACAAGAACCTTTAAGGACCATTGAATCTCAACGACAGTACAGTGATTCCCCACATATTCATTGGCTGTGTTTCAAAACCTAGTGAGGTTTCTTGCTGTCTACCCCCCACATAGAAAGTTTAAATTCTGCTAACCAAACTGAATACTTCTATAATGACTGATTTAGACTCACAATGAATTAAGTGTGTCATGCAAGACAATGATATGCCCTTATTGGTCagaaattgaaatataatttttagaagaaaactatacactttaaaaatatttttaaataataaaaaaaaatctggctaTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075167 lncRNA upstream 78702 35077550 ~ 35081996 (+) False XLOC_037300
TCONS_00073408 lncRNA upstream 79468 35079570 ~ 35081230 (+) True XLOC_037300
TCONS_00073406 lncRNA upstream 130591 35026304 ~ 35030107 (+) True XLOC_037299
TCONS_00073399 lncRNA upstream 150302 35006091 ~ 35010396 (+) True XLOC_037298
TCONS_00075166 lncRNA upstream 187374 34970843 ~ 34973324 (+) True XLOC_037297
TCONS_00073414 lncRNA downstream 693138 35861072 ~ 35862896 (+) False XLOC_037304
TCONS_00075170 lncRNA downstream 819910 35987844 ~ 36102672 (+) True XLOC_037307
TCONS_00075171 lncRNA downstream 956819 36124753 ~ 36177421 (+) True XLOC_037308
TCONS_00075172 lncRNA downstream 1602730 36770664 ~ 36775514 (+) True XLOC_037310
TCONS_00075173 lncRNA downstream 1760121 36928055 ~ 36930192 (+) False XLOC_037312
TCONS_00073407 mRNA upstream 78717 35077546 ~ 35081981 (+) False XLOC_037300
TCONS_00073404 mRNA upstream 134090 35017702 ~ 35026608 (+) False XLOC_037299
TCONS_00073401 mRNA upstream 135181 35014728 ~ 35025517 (+) False XLOC_037299
TCONS_00073410 mRNA downstream 664360 35832294 ~ 35842375 (+) False XLOC_037303
TCONS_00073411 mRNA downstream 664436 35832370 ~ 35836174 (+) True XLOC_037303
TCONS_00073412 mRNA downstream 675798 35843732 ~ 35865528 (+) False XLOC_037304
TCONS_00073413 mRNA downstream 693041 35860975 ~ 35863572 (+) False XLOC_037304
TCONS_00073416 mRNA downstream 708993 35876927 ~ 35885260 (+) True XLOC_037305
TCONS_00073405 other upstream 138384 35017847 ~ 35022314 (+) False XLOC_037299
TCONS_00073397 other upstream 191131 34969450 ~ 34969567 (+) True XLOC_037296
TCONS_00073390 other upstream 369811 34790750 ~ 34790887 (+) True XLOC_037293
TCONS_00073386 other upstream 731478 34426291 ~ 34429220 (+) True XLOC_037290
TCONS_00073385 other upstream 731578 34425775 ~ 34429120 (+) False XLOC_037290
TCONS_00073409 other downstream 261268 35429202 ~ 35429316 (+) True XLOC_037302
TCONS_00073415 other downstream 694150 35862084 ~ 35863842 (+) True XLOC_037304
TCONS_00073420 other downstream 1626450 36794384 ~ 36795322 (+) False XLOC_037311
TCONS_00073421 other downstream 1626785 36794719 ~ 36797775 (+) False XLOC_037311
TCONS_00073422 other downstream 1626785 36794719 ~ 36797828 (+) False XLOC_037311

Expression Profile

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