Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00073411 |
| length | 872 |
| RNA type | mRNA |
| GC content | 0.40 |
| exon number | 5 |
| gene id | XLOC_037303 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 35832294 ~ 35842375 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051726 | regulation of cell cycle | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0048024 | regulation of mRNA splicing, via spliceosome | biological_process |
| GO:0043484 | regulation of RNA splicing | biological_process |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-5845 | Predicted to enable RNA binding activity. Predicted to be involved in regulation of mRNA splicing, via spliceosome. Predicted to act upstream of or within regulation of RNA splicing and regulation of cell cycle. Orthologous to human SON (SON DNA and RNA binding protein). |
| ensembl_id | ENSDART00000122169 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00075169 | lncRNA | upstream | 664436 | 35160698 ~ 35167934 (+) | True | XLOC_037301 |
| TCONS_00075168 | lncRNA | upstream | 668706 | 35160644 ~ 35163664 (+) | False | XLOC_037301 |
| TCONS_00075167 | lncRNA | upstream | 750374 | 35077550 ~ 35081996 (+) | False | XLOC_037300 |
| TCONS_00073408 | lncRNA | upstream | 751140 | 35079570 ~ 35081230 (+) | True | XLOC_037300 |
| TCONS_00073406 | lncRNA | upstream | 802263 | 35026304 ~ 35030107 (+) | True | XLOC_037299 |
| TCONS_00073414 | lncRNA | downstream | 24898 | 35861072 ~ 35862896 (+) | False | XLOC_037304 |
| TCONS_00075170 | lncRNA | downstream | 151670 | 35987844 ~ 36102672 (+) | True | XLOC_037307 |
| TCONS_00075171 | lncRNA | downstream | 288579 | 36124753 ~ 36177421 (+) | True | XLOC_037308 |
| TCONS_00075172 | lncRNA | downstream | 934490 | 36770664 ~ 36775514 (+) | True | XLOC_037310 |
| TCONS_00075173 | lncRNA | downstream | 1091881 | 36928055 ~ 36930192 (+) | False | XLOC_037312 |
| TCONS_00073407 | mRNA | upstream | 750389 | 35077546 ~ 35081981 (+) | False | XLOC_037300 |
| TCONS_00073404 | mRNA | upstream | 805762 | 35017702 ~ 35026608 (+) | False | XLOC_037299 |
| TCONS_00073401 | mRNA | upstream | 806853 | 35014728 ~ 35025517 (+) | False | XLOC_037299 |
| TCONS_00073412 | mRNA | downstream | 7558 | 35843732 ~ 35865528 (+) | False | XLOC_037304 |
| TCONS_00073413 | mRNA | downstream | 24801 | 35860975 ~ 35863572 (+) | False | XLOC_037304 |
| TCONS_00073416 | mRNA | downstream | 40753 | 35876927 ~ 35885260 (+) | True | XLOC_037305 |
| TCONS_00073417 | mRNA | downstream | 65380 | 35901554 ~ 35922201 (+) | True | XLOC_037306 |
| TCONS_00073418 | mRNA | downstream | 478693 | 36314867 ~ 36694998 (+) | False | XLOC_037309 |
| TCONS_00073409 | other | upstream | 403054 | 35429202 ~ 35429316 (+) | True | XLOC_037302 |
| TCONS_00073405 | other | upstream | 810056 | 35017847 ~ 35022314 (+) | False | XLOC_037299 |
| TCONS_00073397 | other | upstream | 862803 | 34969450 ~ 34969567 (+) | True | XLOC_037296 |
| TCONS_00073390 | other | upstream | 1041483 | 34790750 ~ 34790887 (+) | True | XLOC_037293 |
| TCONS_00073386 | other | upstream | 1403150 | 34426291 ~ 34429220 (+) | True | XLOC_037290 |
| TCONS_00073415 | other | downstream | 25910 | 35862084 ~ 35863842 (+) | True | XLOC_037304 |
| TCONS_00073420 | other | downstream | 958210 | 36794384 ~ 36795322 (+) | False | XLOC_037311 |
| TCONS_00073421 | other | downstream | 958545 | 36794719 ~ 36797775 (+) | False | XLOC_037311 |
| TCONS_00073422 | other | downstream | 958545 | 36794719 ~ 36797828 (+) | False | XLOC_037311 |
| TCONS_00073423 | other | downstream | 958545 | 36794719 ~ 36797834 (+) | True | XLOC_037311 |
