RNA id: TCONS_00075170


Basic Information

Item Value
RNA id TCONS_00075170
length 731
lncRNA type inter_gene
GC content 0.49
exon number 4
gene id XLOC_037307
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 35987844 ~ 36102672 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCTGCTTGGTCTTCGCCCACAAAATTACATTTGAGGTCCTCTGGGACATCAGTCAATGGGTGtgcTGCAAGAAACAGATTCCAGTTCTCCGAGGAAAATTATTTCTTCTCTGTGTCGGTATATAGAAAATTCAGGTTGATGACCAGCCGTGATTGTGCTTTGGAAACCTGTCTCAGCCTCCAGCTAAACTGCTCATCCATGACCAATCGATGGTAGGAGCCCACCGATGGAGGAAGATTCTGAGTTTGCACGCGTTTTGTGTGAGCGACTGGTCACCCCATCCCGGCTCCCCTCTGGAGCACAGCCAAGCTTTATTACTGAGCAAGAGAGGGAAACAGGCCTGTCACAGACAAAGTGATAAAGCATCATTACCACACTGCAGAGGAGGAATGAGGCCAGCCCGCTCTGACACAACTCCTTTCATAAAGAGCTTCACTCCGGCATATTGGACAGCCAGTCAAAGAGCTCCAGCAAAGAACAAAATGACTAGTCTGGCCAAATCCTATGCTGGTATTGACATCCACTCTTTCATTACGCCCCACTGCGCTGTACTGCACCACAGGCTCCGGCGCTCTGGTGTGACTTTACACACGCTGCCATCAGAGCCTTCGCATGATAGATGAAATATTTCATTTCACAAAGCAAGTGGCGCCCGTGACAGGATGAGTTGAAAtgatttagactagaaacaagtggAAACATCAAGCATCGTTCAAGACTTGTTAGCCGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073414 lncRNA upstream 124948 35861072 ~ 35862896 (+) False XLOC_037304
TCONS_00075169 lncRNA upstream 819910 35160698 ~ 35167934 (+) True XLOC_037301
TCONS_00075168 lncRNA upstream 824180 35160644 ~ 35163664 (+) False XLOC_037301
TCONS_00075167 lncRNA upstream 905848 35077550 ~ 35081996 (+) False XLOC_037300
TCONS_00073408 lncRNA upstream 906614 35079570 ~ 35081230 (+) True XLOC_037300
TCONS_00075171 lncRNA downstream 22081 36124753 ~ 36177421 (+) True XLOC_037308
TCONS_00075172 lncRNA downstream 667992 36770664 ~ 36775514 (+) True XLOC_037310
TCONS_00075173 lncRNA downstream 825383 36928055 ~ 36930192 (+) False XLOC_037312
TCONS_00075174 lncRNA downstream 825383 36928055 ~ 36932532 (+) True XLOC_037312
TCONS_00075175 lncRNA downstream 888491 36991163 ~ 36991851 (+) True XLOC_037315
TCONS_00073417 mRNA upstream 65643 35901554 ~ 35922201 (+) True XLOC_037306
TCONS_00073416 mRNA upstream 102584 35876927 ~ 35885260 (+) True XLOC_037305
TCONS_00073412 mRNA upstream 122316 35843732 ~ 35865528 (+) False XLOC_037304
TCONS_00073413 mRNA upstream 124272 35860975 ~ 35863572 (+) False XLOC_037304
TCONS_00073410 mRNA upstream 145469 35832294 ~ 35842375 (+) False XLOC_037303
TCONS_00073418 mRNA downstream 212195 36314867 ~ 36694998 (+) False XLOC_037309
TCONS_00073419 mRNA downstream 254068 36356740 ~ 36694998 (+) True XLOC_037309
TCONS_00073424 mRNA downstream 843668 36946340 ~ 36956667 (+) True XLOC_037313
TCONS_00073425 mRNA downstream 864622 36967294 ~ 36974879 (+) True XLOC_037314
TCONS_00073426 mRNA downstream 1039164 37141836 ~ 37296908 (+) False XLOC_037316
TCONS_00073415 other upstream 124002 35862084 ~ 35863842 (+) True XLOC_037304
TCONS_00073409 other upstream 558528 35429202 ~ 35429316 (+) True XLOC_037302
TCONS_00073405 other upstream 965530 35017847 ~ 35022314 (+) False XLOC_037299
TCONS_00073397 other upstream 1018277 34969450 ~ 34969567 (+) True XLOC_037296
TCONS_00073390 other upstream 1196957 34790750 ~ 34790887 (+) True XLOC_037293
TCONS_00073420 other downstream 691712 36794384 ~ 36795322 (+) False XLOC_037311
TCONS_00073421 other downstream 692047 36794719 ~ 36797775 (+) False XLOC_037311
TCONS_00073422 other downstream 692047 36794719 ~ 36797828 (+) False XLOC_037311
TCONS_00073423 other downstream 692047 36794719 ~ 36797834 (+) True XLOC_037311
TCONS_00073428 other downstream 1078768 37181440 ~ 37181557 (+) True XLOC_037317

Expression Profile

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