RNA id: TCONS_00075173


Basic Information

Item Value
RNA id TCONS_00075173
length 1809
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_037312
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 36928055 ~ 36932532 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTAACCAGACCATCAGTTTGCAGTCACTGCTGAGGTGTGATTGCCATTTCTCCACATGTCCCAGActaatctgcaaaagacaaaaacaagactaacagagctctaTATGCTGACTGATCTCCAGCAATAAACAAAgtgttctccagtgttcttctgatattctccactaatgctcttgtgagtctccttcttctgcCTGATGTGGTTCCATTACAGTACCTACCGTGTAAATTACAGCCACAGACAAGGCATCTATCtgacaatctatgcccaccaccacccttTTCCTCTTGGAAGAAAATCCATCTACGCCATCCATctctttttaaaggatatttctGATCATCAGTATCCAGTCATTGTTGAGGTCTGTAATTCCTATTTGTCTCCACGTGCTGcactccagtctgtaaaagacaaagacaggactaacagagctctacatgcttgatgagctccagcaatgcacaagatgttctccagtgttcttcaaTTAATCCCCACAAatgctcttgtgagtttccttcttctgccaGTTGTGTGTCCATTACTTGAACAAGAAACACCTGCCACAAACAAGACATCTACCTAACTATTTAAgtccaccaccacccccttcctcttggatggacatctattcattcatccacccatccattctgAAAATACCTAACCAGATCATCAGTTTGCAGTCACTGCTGAGGTGTGATTCCCATTTCTTCACATGTCTTAGACTAATCTGCAAAAGATAAAAACAAGAATAACAGACCTCTATATGCTGACTGATCTTCAGCAATAAACAAAGTGTTCTCCAGTGTTCTCCAGAAattctccactgatgctcttgtgagtctccttcttctgcCTGTTGTGGTTCCACTACCAATACCTACATTGTAAATTACAGTCACAGACAAGGCAtctatctaacaatctatgcccaccaccaccccttcctcttGAAAGGACATGCATCCATGCACCCATCCATCTCTTTTTGAAGGATATTCCTGATcatcagtgtccagtcattgTTGAGGTCTAAAATTCCTATTTGTCTCCATATGCTGcactccagtctgtaaaagacaaagacaggactaacagagctctacatacTTGATGAGCTACAGCAATGCACAGGATGTTCTCCAGTGTTCctcaaatacaaataataagatgctcttgtgagtttccttctttTGTCAGCTGTGTCCATTACTTGAACAAGAAACACCTGCCACAAACAAGACATTTAGCTAACTATCTAAGCTCACCACcttccccttcctcttggaagcacatctattcattcatccacccatccattcaggTAATACCTAACCAAACCATCAGTTTGTAGtcactgctgaagtgtgattcctatttctccacatgccccagaataatctgcaaaagacaaagCCAGGAATGACATAGCTCTACATGCTGATGATCTCTAGCTATAATCAAAGTGTTCTCCAGTGTTCTTTAGATATTCCTCACCGATGCTCCTGTGATTCTCCTTCTTCTACCTGCTCTGTGTCCATTACctacaatgtaaataacagccacagaTAAGGCATCTATCtgacaatctatgcccaccacgaCCCCCTTTCTCTTGAAAGGACATTCATCCATGCACCCATCCTTCTTCCTTTGAAGGATATTCCTGATcatcagtgtccagtcattgTTGAGGTCTGTAATTCATATTTTTCTCCATATGCTGcactccagtctgtaaaagacaaagataggactaacagagctctacatgcttgctgagCTTTGCTGAGCATTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075172 lncRNA upstream 152541 36770664 ~ 36775514 (+) True XLOC_037310
TCONS_00075171 lncRNA upstream 750634 36124753 ~ 36177421 (+) True XLOC_037308
TCONS_00075170 lncRNA upstream 825383 35987844 ~ 36102672 (+) True XLOC_037307
TCONS_00073414 lncRNA upstream 1065159 35861072 ~ 35862896 (+) False XLOC_037304
TCONS_00075169 lncRNA upstream 1760121 35160698 ~ 35167934 (+) True XLOC_037301
TCONS_00075175 lncRNA downstream 60971 36991163 ~ 36991851 (+) True XLOC_037315
TCONS_00075176 lncRNA downstream 544955 37475147 ~ 37492914 (+) True XLOC_037321
TCONS_00075177 lncRNA downstream 576767 37506959 ~ 37508273 (+) True XLOC_037322
TCONS_00075178 lncRNA downstream 1091698 38021890 ~ 38024061 (+) True XLOC_037326
TCONS_00073443 lncRNA downstream 1228408 38158600 ~ 38161207 (+) False XLOC_037329
TCONS_00073418 mRNA upstream 233057 36314867 ~ 36694998 (+) False XLOC_037309
TCONS_00073419 mRNA upstream 233057 36356740 ~ 36694998 (+) True XLOC_037309
TCONS_00073417 mRNA upstream 1005854 35901554 ~ 35922201 (+) True XLOC_037306
TCONS_00073416 mRNA upstream 1042795 35876927 ~ 35885260 (+) True XLOC_037305
TCONS_00073413 mRNA upstream 1064483 35860975 ~ 35863572 (+) False XLOC_037304
TCONS_00073424 mRNA downstream 16148 36946340 ~ 36956667 (+) True XLOC_037313
TCONS_00073425 mRNA downstream 37102 36967294 ~ 36974879 (+) True XLOC_037314
TCONS_00073426 mRNA downstream 211644 37141836 ~ 37296908 (+) False XLOC_037316
TCONS_00073427 mRNA downstream 222372 37152564 ~ 37297485 (+) True XLOC_037316
TCONS_00073429 mRNA downstream 390030 37320222 ~ 37339656 (+) False XLOC_037318
TCONS_00073423 other upstream 130221 36794719 ~ 36797834 (+) True XLOC_037311
TCONS_00073422 other upstream 130227 36794719 ~ 36797828 (+) False XLOC_037311
TCONS_00073421 other upstream 130280 36794719 ~ 36797775 (+) False XLOC_037311
TCONS_00073420 other upstream 132733 36794384 ~ 36795322 (+) False XLOC_037311
TCONS_00073415 other upstream 1064213 35862084 ~ 35863842 (+) True XLOC_037304
TCONS_00073428 other downstream 251248 37181440 ~ 37181557 (+) True XLOC_037317
TCONS_00073432 other downstream 481678 37411870 ~ 37411986 (+) True XLOC_037320
TCONS_00073437 other downstream 947242 37877434 ~ 37877550 (+) True XLOC_037325
TCONS_00073445 other downstream 1228606 38158798 ~ 38161649 (+) True XLOC_037329
TCONS_00073446 other downstream 1230254 38160446 ~ 38160572 (+) True XLOC_037330

Expression Profile

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