RNA id: TU43726


Basic Information

Item Value
RNA id TU43726
length 516
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC120556076
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 39974853 ~ 39985779 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTTGATTGTGTTGGTTGCTCCGTGACAAGTCAACAGTGTGCAGCTGCCCTCCagctcctctccatctccctctacTTCTATCACATCTCTCTTTACTGGCCCTTCTATCCACTCTATCTATTATTGGTTCTTTTCACCTCTCTCCTATAACATCTACCACTCATCCCTTAATATAAGGTTTTCTATCTCTCCTGTCAAATCTAATAAATCTATCTAAATTTGAGGTTTTCTATCATTCTATCCCTCTAATTCTATCCCGCTCTATCTACATTTGGTTCTGCACTTGTTGCAAGTTACCCTCTGGTTCTGGTTCAAAGATTATCATACCCATTTGTTCTGGTTCAAAGATTATCATATTGTTCTGGTTGGAAAGCTACAGATTACTGGTATCTGTTTTGGATTCATGGGTTGATTGGAACCTGATCATTCTGTTTTATGGATCTGTGAGTTTCTCTGCTCACACTTTTTCtacctctcctgtctctctctcacacacatttgaTTTGGCCTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43723 lncRNA downstream 28339 39944371 ~ 39947111 (-) True G32923
TU43721 lncRNA downstream 28871 39943413 ~ 39946579 (-) True G32922
TU43707 lncRNA downstream 61722 39830569 ~ 39913728 (-) True G32912
XR_005638823.1 lncRNA downstream 322152 39647947 ~ 39653298 (-) True LOC120556195
TU43601 lncRNA downstream 368129 39543171 ~ 39607321 (-) True G32828
TU43757 lncRNA upstream 48501 40026134 ~ 40038460 (-) True G32943
TU43766 lncRNA upstream 70426 40048059 ~ 40049366 (-) True G32952
TU43768 lncRNA upstream 71991 40049624 ~ 40051339 (-) False LOC120556511
TU43771 lncRNA upstream 71991 40049624 ~ 40051296 (-) False LOC120556511
TU43769 lncRNA upstream 72358 40049991 ~ 40051296 (-) False LOC120556511
XM_039795456.1 mRNA downstream 36584 39931306 ~ 39938866 (-) True slc22a18
XM_039796042.1 mRNA downstream 64999 39902668 ~ 39910451 (-) False LOC120556430
XM_039796041.1 mRNA downstream 64999 39902668 ~ 39910451 (-) True LOC120556430
XM_039793951.1 mRNA downstream 76933 39882936 ~ 39898517 (-) True LOC120555276
XM_039796155.1 mRNA upstream 73595 40051228 ~ 40142048 (-) True LOC120556511
XM_039794084.1 mRNA upstream 267296 40244929 ~ 40313805 (-) False samd4a
XM_039794083.1 mRNA upstream 267296 40244929 ~ 40313805 (-) False samd4a
XM_039794080.1 mRNA upstream 267296 40244929 ~ 40313805 (-) False samd4a
XM_039794082.1 mRNA upstream 267296 40244929 ~ 40313804 (-) False samd4a
TU42453 other downstream 5375909 34490660 ~ 34599541 (-) True G31955
TU42326 other downstream 6159080 33806936 ~ 33816370 (-) False LOC120555494
TU42327 other downstream 6159080 33806936 ~ 33816370 (-) False LOC120555494
XR_005638776.1 other downstream 6526389 33438463 ~ 33449061 (-) False znf710b
TU42136 other downstream 6627360 33342247 ~ 33348090 (-) True wdr76
TU43972 other upstream 671043 40648676 ~ 40662621 (-) True G33122
TU44387 other upstream 1780158 41757791 ~ 41764896 (-) True sirt3
TU44774 other upstream 2421658 42399291 ~ 42402136 (-) True G33711
TU44891 other upstream 3007590 42985223 ~ 42990770 (-) True G33796
TU44958 other upstream 3237001 43214634 ~ 43214987 (-) True G33847

Expression Profile