RNA id: TU43768


Basic Information

Item Value
RNA id TU43768
length 1716
lncRNA type sense_over
GC content 0.38
exon number 1
gene id LOC120556511
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 40049624 ~ 40142048 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATCGCTTTAAGACGAGCTCAGGAAACCTGTTGGAAGACTGTGAATGTTTTTGAGAAAAACTCTGCAAGTGATCATGAACAGGTACAGTGGACGGCGTTCAGCGTTACGTagccagaaataaaaaaaggggaTTAAAACGAGCCCTACACACTTTATCTCAACTAACTGGAGATGGAAACGCCACTCACACCGTTCATAAACACAACGTTTCTTTGGAAGTCCTGTGGAAGTTAGACTGTACATACACAGCAGTAgaggaactttttttaaatgcaacatttCTATTGTATAGTCATACAGCAAATGAAGACTAATATTAGCAATATTTTAACTTGAAAACTCTATTTATACAAAGTAAGCTTTATTTATTGTAGTGTCTTCTTTACGTCAGCGTTTAGTGTTTCATCGTTGTCGCCGGGCGTTTGCCGTCTCGCAGTTTCAACCGGAGCGCCCGAAACACAATGTTGTAGTACGGATTTTAGTGTCTGTTGTAAATGATGTCTAGGTTTTGTGTGCTTTATGAGTCAGagcatcaaacaaacaaacaaaaggtttAAATTAGAGCTGCAATGATCAGTAAatcgacaaaaaaaaatgaattcaaGGTTTTGGATTGTTGGACTGAAAATGATGACATGCTTTATGAATTgacaaaataatcagcagattgaCCAAAtgtcattagttgcagccctaatttaaatgttaaaaaccaCTTTTGAACGCTGCCTTTAATCTTGAATGTTAGTGCAGAATCTAAAGATAAATGTCCGCTGTACTGCCACAACCATTAACTACAGCGCTctatatttcattcattttaacttCCAAGTTTTGTTcctaaactgaatatttttagtGCGTTTACAAAACTTGtttttgaacttaaaaaaaaaaaaaacaagttatcgtTCATACGATGACGAAATATTTACTTTGCTTCATCAGTGGAGCGCTGCGCCGCAGCAGTATTACTGCTGATCGTCTTCGTACTAAACGTGCCGACTCACTACAGCGTGAACGCTTTGTCCTAAATATACAAAACCAAATAAGATGCCAGCCCAGTCACTTTTCTGTACGTAGTCACTGTCAAAAAACACGGTTTGTGATTTAACGTTTTGGCGGCCATATTGGAGGTTTAAAGTTCTTTTTACAAGAAGCCTGCTGCATCTCTTAAAACAAAAATTCTGGTATATTGCAACTTgggattttttatttcataatgttatCCTTCATTTCTGTCAGCGACTATAACATTGTACTCGCCAAAATAATCGCTCACGGCGCTACAACAAAGTCTGACAGGACAAGAAACTTTTTGTTTTGCCTTTATtcgataggaaagctgagacatgaaagggggagggggggggggggaaagcgGGCGCGAAAACCGGTCCAggcggattcaaaccctggaccttctgcgttgaagaataaacctctgcacacgtgcgcccgctctaccaactgagctaaacggccacaagaaagtttttttttttaagtgtaaggGGTCCTTGAGTTCTATGAAAGGcgcccataaataaaatgtattattattattattattattattattattattattaatattattaaacaTGACCAGTCAGAAGATCGGACAAACCAGTCCATCcagatgaaaaaaacactttatttggaGGTAAAACAAAGTGAGCACACACCCGATTTGTTGGTAATATCCCAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43766 lncRNA downstream 258 40048059 ~ 40049366 (-) True G32952
TU43757 lncRNA downstream 11164 40026134 ~ 40038460 (-) True G32943
TU43727 lncRNA downstream 63845 39975450 ~ 39985779 (-) False LOC120556076
TU43728 lncRNA downstream 63845 39975450 ~ 39985779 (-) False LOC120556076
TU43726 lncRNA downstream 71991 39975450 ~ 39977633 (-) False LOC120556076
TU43873 lncRNA upstream 156052 40207391 ~ 40208775 (-) True G33048
TU43892 lncRNA upstream 230134 40281473 ~ 40394703 (-) True G33061
TU43893 lncRNA upstream 230134 40281473 ~ 40394703 (-) False G33061
TU43903 lncRNA upstream 280411 40331750 ~ 40334947 (-) True G33068
TU43948 lncRNA upstream 510853 40562192 ~ 40563931 (-) True G33109
XM_039795456.1 mRNA downstream 110758 39931306 ~ 39938866 (-) True slc22a18
XM_039796042.1 mRNA downstream 139173 39902668 ~ 39910451 (-) False LOC120556430
XM_039796041.1 mRNA downstream 139173 39902668 ~ 39910451 (-) True LOC120556430
XM_039793951.1 mRNA downstream 151107 39882936 ~ 39898517 (-) True LOC120555276
XM_039794084.1 mRNA upstream 193590 40244929 ~ 40313805 (-) False samd4a
XM_039794083.1 mRNA upstream 193590 40244929 ~ 40313805 (-) False samd4a
XM_039794080.1 mRNA upstream 193590 40244929 ~ 40313805 (-) False samd4a
XM_039794082.1 mRNA upstream 193590 40244929 ~ 40313804 (-) False samd4a
XM_039794081.1 mRNA upstream 193590 40244929 ~ 40313804 (-) False samd4a
TU42453 other downstream 5450083 34490660 ~ 34599541 (-) True G31955
TU42326 other downstream 6233254 33806936 ~ 33816370 (-) False LOC120555494
TU42327 other downstream 6233254 33806936 ~ 33816370 (-) False LOC120555494
XR_005638776.1 other downstream 6600563 33438463 ~ 33449061 (-) False znf710b
TU42136 other downstream 6701534 33342247 ~ 33348090 (-) True wdr76
TU43972 other upstream 597337 40648676 ~ 40662621 (-) True G33122
TU44387 other upstream 1706452 41757791 ~ 41764896 (-) True sirt3
TU44774 other upstream 2347952 42399291 ~ 42402136 (-) True G33711
TU44891 other upstream 2933884 42985223 ~ 42990770 (-) True G33796
TU44958 other upstream 3163295 43214634 ~ 43214987 (-) True G33847

Expression Profile