RNA id: TCONS_00073426


Basic Information

Item Value
RNA id TCONS_00073426
length 6039
RNA type mRNA
GC content 0.48
exon number 14
gene id XLOC_037316
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 37141836 ~ 37297485 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCCAACAGATCTCCCACCGCACATCACAACTGTCGACTTCACAAACTTGCTTGGGGTGAATTTCTGCAGTGTTGACTGctaaattactttttaatgtGAGTAACTACAGTCTTTTGAAGTATCGTGTGTGATggatcgtcaaagtttgcgagatGCAACTGTAGCGCTTCGTCGTCCGCGAGTGATGTAGTTTTTCATGAACGCCGTTGCTTTGATTCCGAATAAATCGCTGATGGAGTTTCGTGACAGAGTCCAAGCCACTTTCTGCAGTTTTGTTTTGAGCACAATTTCGCTGTTTTTCGGATGCACGCTGGACAACTGAGCAACTGACGAACTTTACATCATCCAAGAAGTCTCATCATGGAGACCACAAGTCCCACCTCCACAGAGAAGAAGGAATTGAAGCCATCAGTCCTGGATGGCAGTAGCTTCACAGACCTTCCCAAAAAGCCCTCACCCACCACAGCATCCAGAGCTCCTCATCTGTTCTCCACCTTCCACACACCAATCCCGATCGACATGCGGCATCATGAAGGAAGGTACCACTACGAGCCGCACCCTCTGCACCCCATGCATGGACCTCATGGATTAGCTGGCAGTCCAGTTATCTCTGATATCTCTCTGATCCGACTGTCGCCTCACGCCGCAGCCACTGGAGAATCCCCCTTCAACCCTCCACACCCGTATGTCAATCCACACATGGAGCATTACCTGCGCTCTGTCCACAGCAGCCCCACGCTCTCCATGATCTCTGCGGCCCGAGGACTGAGCCCTGCAGAATTGACCCATGAGCATCTGAAGGAGCGCAGTTTGTTTGGCCTCCCTCCTCCGCCTCCTGGAGCAAACCCTTCAGAGTACTATCACCTCATCGCCAGCCACCGTAGCCCTTATGGAGACCTGCTCATGCAGACGGGAGCTGCGGCCGCTCATCTTCCTGACTACATGAGCCCAGTGGACATGTCTCGTTTCCCGAGTCCCAGACTGACGCCGAGGGTGAGCAGGAAGCGAGCATTGTCCATCTCTCCAGTCTCGGATGCCAGCATCGACCTGCAGACCATGATACGCACCTCACCCAACTCTCTGGTGGCCTACATCAATAACTCACGCTCCAGCTCGGCAGCCAGCAGCTCTTACGGCCACCTCTCCGTCGGGGCCATCAGTCCATCCTTCACGTTCCCACACCCCATCACACCGGTTGCATACCACCAGCTGTTGTCCCAGCAGAGGGGTCTGAATGCATTTGGACACACTCCTCCTCTGCTGCAGCCTTCACCTGCCCTCAGCAGCAGACAGCAGACACTCGTGGCTGCAGCCGCTCTCAacaacaccaccagcagcagcaccAGCAGCAGCACTGCAGACACCAGCACCGAGTCCAGCCAGAACGCTGGGGGAGACCCGGCCGTGAGCAGCACCGTCAACCCCATGATCTTCAAGCGGTCCAAGGTGAAGACCGAAGCAGAGGGGCCTCATCCCATCTCTCCTGGTTCTCAGGATCACTTGGAGTTACGAGAGGAGCTTGATAAAGATGAATGCAAGCAGGAGCCCGAGGCCGTGTATGAAACCAACTGCCACTGGGAAGGATGTGCCAAAGAGTACGACACGCAGGACCAGCTCGTTCATCACATCAGTAATGACCACATCCATGGAGAGAAGAAGGAGTTTGTGTGTCGATGGGTGGAGTGCTCTCGAGAACAGAAGCCTTTCAAGGCCCAGTACATGCTTGTGGTCCACATGCGTCGACACACTGGGGAGAAGCCCCATAAGTGCACATTTGAAGGTTGCTCGAAGGCTTATTCTCGACTGGAAAATCTCAAAACTCACTTGAGGTCccacacaggggagaaaccttacGTATGCGAGCACGAGGGCTGCAACAAGGCTTTTTCCAACGCTTCAGACCGGGCCAAGCACCAGAACCGCACGCACTCCAATGAGAAACCATATGTGTGTAAGATCCCAGGTTGCACAAAACGTTATACAGACCCCAGTTCACTCAGGAAGCATGTGAAGACTGTTCACGGGCCAGAAGCACATGTCACTAAGAAGCAGCGCGGCGATGCACCGCCGAAACCTCACCCCCCTAAAGGGAATGGAGAAAATGAGGCCCACACAAAGCATGTGAGGGGGAGAACAGATGGGTCAGGAGAGGCCAACAGCACCACCAGAGGCGTGGAGGACTGCCAACATGTCAAGAcgatcaagactgaaaacacagtGATGTATCAGTCCAGCCCTGGTGGTCAGTCGTCATGTAGCAGTGAGCCATCGCCACTTGGCAGTGCCACCAACAATGACAGTGGAGTAGAGATGGCCATGCACAGTGGAGGCAGTTTGGGGGACCTAAGTGCTTTAGATGACACACCTGTAGTCGATTCTACCGGTTCTCCAGGTACTTCTGCTGGAGTTGGTCTCCAGCTGCGTAAAAACAGGGCGGGACTACTACAGCTTGAGCACATCAAGaaggaaaaactaaaaactgtACGAGACTCCTGCTCCTGGGCAAATGCACCACCTCAAGTCCGAAATACCAAGCTGCCTCCAATACCCTCTATTGACTCACTGCTGGACGCTCCAAATATAGGGACTCAAATGTCTGTACCTCCAACCCAGCATTTAGGAGACTTGTCTTCATATGAGATGACAATGCTTAATCAGCTACATGAGCGCAGAGATAGCTCCACCAGCACAAtgagctcagcatatataagccgTCGGTCCTCTGGCATTTCACCTTGCTACTCCAGTCGTCGCTCAAGTGAGGCTTCGCAATTTGGAGTCCGCAACAACAATGTCAGCTCAGCAGACTCCTATGACCCGATCTCCACAGATCTGTCACGTCGTTCCAGTGAAGCAAGCCAATGTGGTGGTACAGGTGGGCTCCCAAGTTTACTAAATCTCACACCAGCTCAACACTACAGTCTTAAGGCGAAATATGCTGCAGCCACTGGGGGTGCACCACCAACACCTCTGCCCAACATGGATCGCATGAGCCTTAAAACTAGAATGGCCATGTACAATGACTCGCAGGACAGTTCAGCACATTTGCACCATGCCCAAGGTGTAGTCAACTCAAGACGCTGCAGCGACACTGGGTACGGTGCCCCTGGCATAATGCCTCATGAAGTTCCGGCCAATCTTCCACGACGAGCAAGCGATCCTGTTCGTCGTACAACTCTTGACCCACTCTCCTTGCCAAGAGTTCAGCGGTTCAACAGCATCAGCAACATGAACCTATCACGTCTGCCTGCATATGATCGACGTGCTTTCAACATGCAGAACAACACTTGGTCTGATGGAAGCTTGCACCGTCATCCCTTCAGCCAAAGGCCACCTAGCATATCAGAGAACATTTTAATGGAAAATATGGCCACTGATGGAGGAGATCAACAAGGGGATGATTTGGTGCTTCCCGATGACATGGTACAGTACCTCAGGTCCCAGAATGGTAACTCAAATCACGATTCTGGGATTTCTGTCAATGGCGGTCATGCTCTAGAGTTCCATGGTAATATGACCTCCCAACAACAACAGTTCTATGGGCAACGCAGAATGGGCATGGCAAGCATCAATGGAAGTCACGTAGAGCCTGTTCCAGAACAAATAGCTGATCCGCAGGGCATGAACAAAAACAACATGCCTGTGCAGTGGAATGAGGTCAGTTCTGGTTCTGCAGATGCAGTTTCAAGGGTTCCAaagcaacagcaacaacaactcaGAGGGAACTTGACAGTTGTTCAGCAGAAGCAGAACTTTGGCTCTTATCAAGGATTTGGATCAAACCAGCAGATTGTACCAATGAGCCAGAATCTGGCTAGTCTACAGCAGGCTTATCCACAGAGAAACATCCAGAGGATGAACACTGTCCAGCAGTATCGCCAGTCCATTTCCAATCCATGTCAGAATATCGGTGAGCAAGTAAACCGGCAGGACCTTAGTTACAATTCCAATCAACGCCTAATATGCAATAGCATGGGCCCACCCAATGGGAGAGTGGTGCAAAACCAGGAGCTCCAGAATTATAGATCAAACTTGATGCATATGAATAACATCAATCAGCAAAATTACGTTCCTCTAACTCAGACAGCTATTCAGAATGCAGGCAGAGGACTGATACAGCCCAGACCTCCGTCCGAACCCAAACCATTGAATAGGCAACACTCAGGTTCAGGTATGGTTCAGCCAAACGGTTGCTCCCTGTCCAATGTCAACTCCTCAGAAGCTAGCCCAAAGAGACCAGGTGAAGTCGGTCAACACAGCAATGGGAATGGCACTATGTACTATTCAGGAGAGATCCATATGTTGGACAACGGCATTGATTATGGTTCTCCCATGTCTCCGTGCACAAACCAAGCCCCTGTTGCTTCTGTGTCTACAATGGCATCTCCTGGTGTCAACCAGGTCACCAGCACAGTGGACTCCACTCAGTCCCTTGACCACACTCAAATAGACTTTGATGCCATGTTGGATGACGGAGACCATTCGAGTCTAATGTCTGGCACTTTAAGTCCAGGCCTTCTGCAGAGTATTTCGCAGAATTCCTCAAGGCTCACCACCCCGCGTAACTCTGTTACCCTGGCCTCAGTACCGGCAGGTATTGGCAACATGGCTATTGGTGACATGAGCTCAATGTTAACGGCCCTTGCGGAAGAAAGCAAATTCTTAAACATGATGGCTTGATAATTGAAGGCATTACTCTAAATTCAGGGGTGGCTTTTTATGTtctttaaatgtttgaaaacattgaacaCTAAAGTGACTGTGTAAAACTGTTTCAAGAACAATAACTTGTGCTCTTAATGGGAGAAAAGCACGTATGCATATTTTTCATGAGCAAAGGCACTGAAATACGGTTTCTTACTAGAGTTGAATTTGCAGCATTCAGGTGAACACTGTCAATGATGTTATCAGACGTTTGCTGTTGTATGCAACTAGACTGGCAAAAAACCTCAATGTTTGACATGTTTCACAAAGCCATATGTTCGATACAAGTTTGTTAATGGGTATTCGTGTACATCAGGGTAATGGTTATTAGGCTTGTTCTGATTTCCCTTTCTCAGCAGTGCACTGAAATTCACCAAGTGCCTCAAGTAAAAGAACATAAGTACGTTTTTAAACTCATATAATGCTATGTAATCTGCTATGTAGCTATACTAATAGTTACCGatctttttcatttttcttcattttcgttttttttttttttttgtttatagttATTTCATATCCTTCATGCTTTAAATTATGTGTAATACATATTAACTGTACCAGCTTGTTCAAATTGTGCACAATCCTGTTCCCCCTTTTGACTTTGAAGGGGTGCTTAAAGAAACTGATGGGGGGGAAATCTGCACAATTGACAATGGTATTGACAGATCTCCTCGAAGCAGCTCCAGAAGTTACAGATCTCTGTATTTTGTCTCATCTGGCTGTGTGATACTGAAGGACAGCATCTCTGCGCTTCAGCCTGTGTAGGCTTGACGAACCTTGCGTCCCTTTGAGATGTCTTTAAAGGAATATGCAAGTACTCTGCGTGCTCTTCTTGGAGATTACATCCCAATTAACAGGTTCATCAGCGGCTTGTGCTTGTGATAAACCACAGGCGCATACTAAAAGGACTTCTGCCTTTGATTTAGTACTGCTACAAGAAATTTCCACCAAGGACAGAGCAATTCTGAAGGTCTGAACTATTCAAGTTGGTTGGTGTTTTGTGATGCCATTTGCAGTGGTCGATGTATGTATAGCTTTTGTACATTTTCAATACAGCATCTTCAGTTTTCTGTTTTAACTTGCTTTGCCTCTTCTTTCTTGACTCCTTTCAAGCATCTAAATGTGTTTAACACCAATATTGGTCGTTTTTGGCAGTTTTGTGAACATAAATATTCTGATCCACACCAGCAGTGTTATATTCCTGAAGAAATGAAACGTGTAATCATTTACTCCCTTTCATGGTATTTCAAACCTCTATGATTTTCTTCTTTCTTACAGACCATAAATCATTAAAGATTGTTATTGACTTTCACTGTATGACCAAAAAA

Function

GO:

id name namespace
GO:0021523 somatic motor neuron differentiation biological_process
GO:0042694 muscle cell fate specification biological_process
GO:0032835 glomerulus development biological_process
GO:0021532 neural tube patterning biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0001756 somitogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0048793 pronephros development biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0055002 striated muscle cell development biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0042476 odontogenesis biological_process
GO:0048557 embryonic digestive tract morphogenesis biological_process
GO:0021634 optic nerve formation biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0048618 post-embryonic foregut morphogenesis biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0008015 blood circulation biological_process
GO:0070935 3'-UTR-mediated mRNA stabilization biological_process
GO:0007399 nervous system development biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0007411 axon guidance biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007420 brain development biological_process
GO:0021508 floor plate formation biological_process
GO:0005634 nucleus cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990706-8 Enables sequence-specific DNA binding activity. Acts upstream of or within several processes, including animal organ development; nervous system development; and regionalization. Located in non-motile cilium and nucleus. Is expressed in several structures, including central nervous system; digestive system; head; mesoderm; and neural plate. Human ortholog(s) of this gene implicated in Culler-Jones syndrome; holoprosencephaly 9; and spina bifida. Orthologous to human GLI2 (GLI family zinc finger 2).

Ensembl:

ensembl_id ENSDART00000024555

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075175 lncRNA upstream 149985 36991163 ~ 36991851 (+) True XLOC_037315
TCONS_00075174 lncRNA upstream 209304 36928055 ~ 36932532 (+) True XLOC_037312
TCONS_00075173 lncRNA upstream 211644 36928055 ~ 36930192 (+) False XLOC_037312
TCONS_00075172 lncRNA upstream 366322 36770664 ~ 36775514 (+) True XLOC_037310
TCONS_00075171 lncRNA upstream 964415 36124753 ~ 36177421 (+) True XLOC_037308
TCONS_00075176 lncRNA downstream 178239 37475147 ~ 37492914 (+) True XLOC_037321
TCONS_00075177 lncRNA downstream 210051 37506959 ~ 37508273 (+) True XLOC_037322
TCONS_00075178 lncRNA downstream 724982 38021890 ~ 38024061 (+) True XLOC_037326
TCONS_00073443 lncRNA downstream 861692 38158600 ~ 38161207 (+) False XLOC_037329
TCONS_00073452 lncRNA downstream 996011 38292919 ~ 38296930 (+) False XLOC_037333
TCONS_00073425 mRNA upstream 166957 36967294 ~ 36974879 (+) True XLOC_037314
TCONS_00073424 mRNA upstream 185169 36946340 ~ 36956667 (+) True XLOC_037313
TCONS_00073418 mRNA upstream 446838 36314867 ~ 36694998 (+) False XLOC_037309
TCONS_00073419 mRNA upstream 446838 36356740 ~ 36694998 (+) True XLOC_037309
TCONS_00073417 mRNA upstream 1219635 35901554 ~ 35922201 (+) True XLOC_037306
TCONS_00073429 mRNA downstream 23314 37320222 ~ 37339656 (+) False XLOC_037318
TCONS_00073430 mRNA downstream 32128 37329036 ~ 37334614 (+) True XLOC_037318
TCONS_00073431 mRNA downstream 70065 37366973 ~ 37453128 (+) True XLOC_037319
TCONS_00073433 mRNA downstream 457937 37754845 ~ 37840350 (+) True XLOC_037323
TCONS_00073434 mRNA downstream 553452 37850360 ~ 37862563 (+) False XLOC_037324
TCONS_00073423 other upstream 344002 36794719 ~ 36797834 (+) True XLOC_037311
TCONS_00073422 other upstream 344008 36794719 ~ 36797828 (+) False XLOC_037311
TCONS_00073421 other upstream 344061 36794719 ~ 36797775 (+) False XLOC_037311
TCONS_00073420 other upstream 346514 36794384 ~ 36795322 (+) False XLOC_037311
TCONS_00073415 other upstream 1277994 35862084 ~ 35863842 (+) True XLOC_037304
TCONS_00073432 other downstream 114962 37411870 ~ 37411986 (+) True XLOC_037320
TCONS_00073437 other downstream 580526 37877434 ~ 37877550 (+) True XLOC_037325
TCONS_00073445 other downstream 861890 38158798 ~ 38161649 (+) True XLOC_037329
TCONS_00073446 other downstream 863538 38160446 ~ 38160572 (+) True XLOC_037330
TCONS_00073447 other downstream 864355 38161263 ~ 38161389 (+) True XLOC_037331

Expression Profile

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