RNA id: TU43971


Basic Information

Item Value
RNA id TU43971
length 383
lncRNA type sense_over
GC content 0.55
exon number 2
gene id LOC120556513
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 40661364 ~ 40663657 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCACCCTTCGCTACGAGCTGGTCAGCGTGCAGCCTGGAGAAGACCAAGACTACGTGATGAACAGGGTCATGGAGGCCGAAACTGAGGAGGTGTGGGCAGGCCTCCGTTTCCTGGCCGGTGAATGGCTGTGGGTGAACGGGGCGAGTATGTTGTACTCTGACCTGCCCCTCTGCCCCCCCCTGGTGCAGCACTGTGGAGCCTTGTCCAAGAACAACACAGGGAGCATGGAGACCAAAGACTGTTCTGAGAAAAGGAACTTCCTGTGTTATAGCACATCCTGACATCACCCCTATCATCTGCATCAGGGTGGTCACTAGCAGAAGTTTATCTAAGTTGGCACACAGCTTCTCAAGACAGTAGACATACAACCGTGTAGGCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43959 lncRNA downstream 71794 40564244 ~ 40589664 (-) True LOC120556146
TU43948 lncRNA downstream 97527 40562192 ~ 40563931 (-) True G33109
TU43892 lncRNA downstream 266755 40281473 ~ 40394703 (-) True G33061
TU43893 lncRNA downstream 266755 40281473 ~ 40394703 (-) False G33061
TU43903 lncRNA downstream 326511 40331750 ~ 40334947 (-) True G33068
TU44032 lncRNA upstream 255672 40918227 ~ 40918584 (-) True G33167
TU44033 lncRNA upstream 257779 40920334 ~ 40925054 (-) True G33168
TU44071 lncRNA upstream 274286 40936841 ~ 40937064 (-) True G33196
TU44277 lncRNA upstream 782974 41445529 ~ 41445742 (-) True G33347
TU44302 lncRNA upstream 898277 41560832 ~ 41565475 (-) True G33368
XM_039795536.1 mRNA downstream 8707 40648347 ~ 40652751 (-) True LOC120556133
XM_039795933.1 mRNA downstream 30333 40598769 ~ 40631125 (-) True LOC120556376
XM_039795934.1 mRNA downstream 30333 40610568 ~ 40631125 (-) False LOC120556376
XM_039795545.1 mRNA downstream 71891 40564241 ~ 40589567 (-) False LOC120556146
XM_039795546.1 mRNA downstream 71891 40564241 ~ 40589567 (-) False LOC120556146
XM_039794190.1 mRNA upstream 3717 40666272 ~ 40671602 (-) False foxr1
XM_039794189.1 mRNA upstream 3717 40666272 ~ 40671599 (-) True foxr1
XM_039795758.1 mRNA upstream 10360 40672915 ~ 40682357 (-) True LOC120556279
XM_039795681.1 mRNA upstream 266915 40929470 ~ 40934556 (-) True ndufs3
XM_039795679.1 mRNA upstream 275260 40937815 ~ 40948565 (-) True ptpmt1
TU42453 other downstream 6061917 34490660 ~ 34599541 (-) True G31955
TU42326 other downstream 6845088 33806936 ~ 33816370 (-) False LOC120555494
TU42327 other downstream 6845088 33806936 ~ 33816370 (-) False LOC120555494
XR_005638776.1 other downstream 7212397 33438463 ~ 33449061 (-) False znf710b
TU42136 other downstream 7313368 33342247 ~ 33348090 (-) True wdr76
TU44387 other upstream 1095236 41757791 ~ 41764896 (-) True sirt3
TU44774 other upstream 1736736 42399291 ~ 42402136 (-) True G33711
TU44891 other upstream 2322668 42985223 ~ 42990770 (-) True G33796
TU44958 other upstream 2552079 43214634 ~ 43214987 (-) True G33847
TU45036 other upstream 2790157 43452712 ~ 43456847 (-) True G33914

Expression Profile