RNA id: TU44774


Basic Information

Item Value
RNA id TU44774
length 1465
RNA type TUCP
GC content 0.46
exon number 2
gene id G33711
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 42399291 ~ 42402136 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCACACGTAAAATACAAGATCATATAAAGGTTTATGACTGGTGCGCTTTATTAAGATGAACTGATAACTTAAGATATAGACACAATTGTACAATTTATCAATCTgtacaaaacataaaaccatTCATTTTGACCCCCCTCTCACATTCAACCTATTCAAATCCATTGAAATGACATTTCACTCTTTAACACGTTTACACTGGAATTACAGTCAGTTATAGAATTCAatatagtaaaaataaaaaaagagaagaaaatcacaattctttaaaaaaacaaaacacagaacaaTGGAGGTACATGAAACAGGATTCGAAAATCATATTTTCGGAAGAAAGAAAATCACTTTGTCCACAGATTGCCAGCTAAGTGAGTCTGGCGAGGCCCGGCTGGCGGCGCCGTCTGTTCCCAAGAAACGCCATTGGCGCTGCCAGccaggctcacacacacactccagagCTGCCCATCTACCCTCTGcctctaaaacacacacatacacacacaccaagttCAGGCATTGTATACGTCTGCTAACACCACCATACACTGACCCGGCTATAACCTGGAAATTCAACAGAACACACACTCGGGGAGTTTCTAGTAAAGTAGGTGGTTTAGCGAGGCATCTGTCCGCTCACACGCCGGACGCAACACTTAGCGCGTTAGCACGTCGTCTCCGCTAGCCAAGCCTGACCCTCAGCAGATCTCGCGCACGGTTAAATGACAATGTTAGCTACATAAGGCGATACGACACGGAGTTGCAGTCGTAACAGAAAGCCATGCATTGTGTTGAAGTCAGAGGCAGCTCGGTGTACGTAGGCTTAATGTGACGGGGGGGCAACACGGTTGCCTGTCCCCCTTCAGGGACAGACGGAGCAACGGTATTGGTTGAGGAGGAGGTGGTATGAAGGCGAGTTGTTAGCAGGTGAACGAGACGGGTGAAGGAGGCACTGTGATCAGACGTTGGCAAGAATGGAGCTCAACTCCCCGAAAAGTGTTTCCTCGATTCCTCGTCGTGTCCTTCGTCAAACCTTTTCAGTCCGTTAACAAGGACTCGAGGAAAGACTTTTGAGACTTTACAGTGGCTGAACATAATATTTTGGTTTGCGTAAAAGTGGCAgcgtctttaaaaaaaacgcgGTACATCCgacaaaaaggaagaaaaacgaGGTCCAGATTCTCCATGTGCAGTAAAAATCTAATCCTAGACAAGAAATGATGTTTAACGATTTAAGGTTCAGTGCAAGATTGGTGACAACTTCACGCTCATGAAATCAACCCCCCGAGGGTGAAGGACCTTTCTCAGTGGGCTGCACCTGGATGTTGACCACGTTGTTGCTGGGGGACATGTCACTCTCCTGACGCTCCGACATCTGCTTCTGGGAGACGATACGGTAGATCTCTGAGGGGGGGGAGTAGTAACAGTGTCATTTATTGTTATAGCCTGTATACCCCTCTCCCTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44728 lncRNA downstream 170522 42210287 ~ 42228769 (-) True G33689
TU44729 lncRNA downstream 185194 42211568 ~ 42214097 (-) True G33690
TU44538 lncRNA downstream 249840 42018773 ~ 42149451 (-) True G33551
TU44573 lncRNA downstream 259437 42105398 ~ 42139854 (-) True G33569
TU44571 lncRNA downstream 283830 42097785 ~ 42115461 (-) True G33568
TU44802 lncRNA upstream 213488 42615624 ~ 42617367 (-) True G33735
TU44803 lncRNA upstream 213488 42615624 ~ 42617367 (-) False G33735
TU44809 lncRNA upstream 260487 42662623 ~ 42691804 (-) True G33740
TU44828 lncRNA upstream 352319 42754455 ~ 42756824 (-) True G33753
TU44837 lncRNA upstream 416672 42818808 ~ 42911206 (-) True G33759
XM_039794092.1 mRNA downstream 35459 42349696 ~ 42363832 (-) True dapk2a
XM_039795858.1 mRNA downstream 57949 42265493 ~ 42341342 (-) False herc1
XM_039795863.1 mRNA downstream 57949 42265493 ~ 42341342 (-) False herc1
XM_039795864.1 mRNA downstream 57949 42265493 ~ 42341342 (-) False herc1
XM_039795860.1 mRNA downstream 57949 42265493 ~ 42341342 (-) False herc1
XM_039795619.1 mRNA upstream 5287 42407423 ~ 42590136 (-) False LOC120556187
XM_039795621.1 mRNA upstream 5287 42407423 ~ 42589096 (-) False LOC120556187
XM_039795620.1 mRNA upstream 5287 42407423 ~ 42589096 (-) False LOC120556187
XM_039795618.1 mRNA upstream 5287 42407423 ~ 42589096 (-) True LOC120556187
XM_039794624.1 mRNA upstream 216756 42618892 ~ 42629084 (-) False tipin
TU44387 other downstream 634395 41757791 ~ 41764896 (-) True sirt3
TU43972 other downstream 1736670 40648676 ~ 40662621 (-) True G33122
TU42453 other downstream 7799750 34490660 ~ 34599541 (-) True G31955
TU42326 other downstream 8582921 33806936 ~ 33816370 (-) False LOC120555494
TU42327 other downstream 8582921 33806936 ~ 33816370 (-) False LOC120555494
TU44891 other upstream 583087 42985223 ~ 42990770 (-) True G33796
TU44958 other upstream 812498 43214634 ~ 43214987 (-) True G33847
TU45036 other upstream 1050576 43452712 ~ 43456847 (-) True G33914
unassigned_transcript_147 other upstream 1125445 43527581 ~ 43527653 (-) True trnaw-cca_1
TU45172 other upstream 1372474 43774610 ~ 43813225 (-) False LOC120556522

Expression Profile