RNA id: TU45177


Basic Information

Item Value
RNA id TU45177
length 375
lncRNA type intronic
GC content 0.54
exon number 3
gene id G34002
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 43776548 ~ 43777594 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttaaagggatacgccaccgtttgttgaaatagggctcatcccggtctcctctagctgtagataggtggggtctcctctagctgtagataggtggggtctcccctagctgtagataggtggggtctcctctagctgtagataggtggggtctcctctagctgtagataggtggggtggggtctcccctagctgtagataggtggggtctcctctagctgtagataggtggggtctcctctagctgtagataggtggggtctcctctagctgtagataggtgaggtctcctctagctgtagataggtggggtctcctctagctgtagataggtggggtctcctctagctgtagataggtggggtctcctctagctgt

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05164 Influenza A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45152 lncRNA downstream 96337 43674649 ~ 43680211 (-) True G33981
TU45146 lncRNA downstream 144694 43631559 ~ 43631854 (-) True G33976
TU45117 lncRNA downstream 256653 43518953 ~ 43519895 (-) False G33960
TU45118 lncRNA downstream 256653 43518953 ~ 43519895 (-) True G33960
TU45040 lncRNA downstream 286623 43489721 ~ 43489925 (-) True G33918
TU45188 lncRNA upstream 37153 43814747 ~ 43840755 (-) True G34008
TU45190 lncRNA upstream 37153 43814747 ~ 43817410 (-) False G34008
TU45183 lncRNA upstream 67550 43845144 ~ 43845807 (-) True G34003
TU45180 lncRNA upstream 67920 43845514 ~ 43845807 (-) False G34003
TU45200 lncRNA upstream 79028 43856622 ~ 43876691 (-) False G34014
XM_039795483.1 mRNA downstream 20375 43709700 ~ 43756173 (-) True LOC120556093
XM_039794592.1 mRNA downstream 280344 43479602 ~ 43496204 (-) False LOC120555671
XM_039794594.1 mRNA downstream 280651 43479602 ~ 43495897 (-) False LOC120555671
XM_039794590.1 mRNA downstream 280651 43479602 ~ 43495897 (-) True LOC120555671
XM_039794593.1 mRNA downstream 280730 43479602 ~ 43495818 (-) False LOC120555671
XM_039795968.1 mRNA upstream 40138 43817732 ~ 43848899 (-) True si:ch211-71n6.4
XM_039796167.1 mRNA upstream 275579 44053173 ~ 44054851 (-) True LOC120556524
XM_039795877.1 mRNA upstream 668589 44446183 ~ 44477267 (-) False LOC120556335
XM_039795876.1 mRNA upstream 671465 44449059 ~ 44477267 (-) True LOC120556335
XM_039795598.1 mRNA upstream 755829 44533423 ~ 44650930 (-) True LOC120556176
unassigned_transcript_147 other downstream 248895 43527581 ~ 43527653 (-) True trnaw-cca_1
TU45036 other downstream 319701 43452712 ~ 43456847 (-) True G33914
TU44958 other downstream 561561 43214634 ~ 43214987 (-) True G33847
TU44891 other downstream 785778 42985223 ~ 42990770 (-) True G33796
TU44774 other downstream 1374412 42399291 ~ 42402136 (-) True G33711
unassigned_transcript_148 other upstream 159382 43936976 ~ 43937048 (-) True trnav-uac
TU45304 other upstream 307832 44085426 ~ 44089423 (-) True G34078
TU45552 other upstream 1014388 44791982 ~ 44915666 (-) False LOC120556527
TU45551 other upstream 1110288 44887882 ~ 44890809 (-) False LOC120556527
TU45959 other upstream 1361062 45138656 ~ 45180300 (-) False G34518

Expression Profile