RNA id: TCONS_00073439


Basic Information

Item Value
RNA id TCONS_00073439
length 2422
RNA type mRNA
GC content 0.48
exon number 14
gene id XLOC_037328
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38074082 ~ 38130085 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACTCGACCGCGGACACCGCAGCGCAGCGAAACTGGAGCAAACAGTTCAGTATCCTCCACCGCCGAGCCAGTGGACCGGGACCGAGCGGCAGCCTCCACCGTGGACGGATGAACTCGCAGAAATGTCCCGGCACATCTACACCCGACACGGGATAGGCGACGGAGTCCAGAAGCCCATATTTCAGGTGAATAGAGGCACCTACTCACGCCGCAGCCGACTTAAGAGATCTGATGGCAGTACTACATCCACCAGCTTCATCCTCCGCCAGGGCTCCGCCGATTCCTACACTAGCAGACCATCTGACTCGGATGTCTCTTTGGATGAGGAGCAAGGCGGCCGGCAGGAGAAAGAACAGCAGGCCACCGTTCAACTGGAGAGGGCAAAGGCCAAAGCGGTGGCCTTTGCTGTGAGGACAAACGTCAGCTACTGCGGTGCCCTGGATGAAGATGTTCCTGTCGCTGGCACAGCCATTTCTTTTGATGCTAAAGATTTTCTTCACATCAAGGAGaagTACAACAACGACTGGTGGATCGGCCGACTGGTGAAGGAAGGTTGTGACATCGGATTCATTCCCAGTCCCTTAAAACTGGAAAACATTCGCTTACAGCAAGACCAAAAAAGAGGCCGTTTCCATGGGAAGTCCAGTGGAAACTCCTCCTCCAGTCTGGGTGAAATGGTGTCAGGCACATTCAAGCCCAACCCTGCTTCTGCAGGTAAACAGAAACAGAAAGTGGCTGAGCACATTCCTCCATATGATGTGGTTCCTTCCATGAGGCCGGTGGTGCTAGTTGGCCCATCACTAAAGGGATACGAGGTGACAGATATGATGCAGAAAGCCCTCTTTGACTTTCTGAAACACAGGTTTGAAGGCAGAATATCAATCACTAGAGTAACTGCAGACATCTCTTTAGCCAAGAGATCTGTCCTGAATAACCCTAGTAAGAGAGCCATCATTGAGAGATCCAACACCAGATCCAACCTGGCGGAGGTTCAGAGTGAGATCGAGCGGATCTTTGAATTGGCCAGATCCCTTCAGCTGGTTGTTCTCGATGCCGACACGATCAACCATCCTGCCCAGCTCATCAAGACTTCTTTAGCTCCCATTATTGTCCATGTTAAAGTGTCTTCTCCCAAGGTATTACAACGGCTGATTAAATCAAGAGGAAAGTCTCAGAGCAAGCATTTAAATGTACAACTGGTGGCAGCAGACAAATTAGCTCAGTGCCCTCCAGAGATGTTTGACATAATTTTGGATGAGAATCAGCTGGAGGATGCGTGTGAACATCTATCTGAATATCTGGAGGCTTATTGGCGCGCAACACACACTTCCCTTAGCACTCCACTAAACCCTCTGCTGGGCCGCAATCTGGGCTCCACTGCACTCTCACCGTACCCCACAGCCATCTCTGGACTACAGAgccaaagaaacaaaaacagcaatcACATCACCGACAACTCTCCAATGGAGCGGCGCAGCTTGATGACATCTGATGAAAACTACCACAACAACGAGCGGCAAAAGAAGACCCACAACCGGCTGTCCTCCAGCTCCCAGCAGAGTCGCGACCACTACCCTCTGGTAGAAGAGGACTACCATGATCCCTACCCAGACGCCTACAAACCCCACCGCAACCGGGGCTCTCCAGGCGGCTACAGCAACGATTCACGCCACAGACTCTAAACATCACAATATTGTGTACATCCTTTCTGGAAAGTCAGTGCATTGTGTTCACTCCAGCACAGGTAAACAAGTACGGGCCATCTTATCTAAAAGCAAACTCCAAGTGTCCGGTCACTCCATGTAAAGCAGATGTTTGCGTGCTGATTTTATCAGCTGGAGTTAAGATAAAATCCTCTCCTGGTGGAGGGATCTATAATTCCTGGTCCATCCAGTTTCTGATAAAATAGCAAATTTGCAGGACTTAATGAGGGGGCATGTTAGTTTTTACCCTGAACTACAGTAGTGCAGGCATGAAGAAATGCTCAACAGTGCCAACAGCCAATTAGCACAGAGCCTTTTTGCACGATATCAGTAGCCAATGGAAGTGTAATGCATTCACGGCATTGTTTCTTccttttttagcttttattttagatGGTCTCCTTATTTGCACAGACAGGGTCAGGTATGCAGCAAAAAGCTTCATAGCAGCCAAAACTGTTTCATCAAATgatgatatatacagttgaagtcagaattattagccctcctgaattattagccccccgtttattttccctccaatttctgtttaatggaaagaagatttttaacacatttctaataatatttgactagatatttttcaagattctaGTATTTAGCTTGAAGTtcaggttaactaggttaatagttTGTTAGgtgagttagggtaattaggcaaatcattgtgtaatgatggtttattctgtagacaatcg

Function

GO:

id name namespace
GO:0007528 neuromuscular junction development biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:1901385 regulation of voltage-gated calcium channel activity biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function
GO:0008331 high voltage-gated calcium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080320-2 Predicted to enable high voltage-gated calcium channel activity. Acts upstream of or within epiboly involved in gastrulation with mouth forming second. Predicted to be part of voltage-gated calcium channel complex. Is expressed in several structures, including cardiovascular system; nervous system; pleuroperitoneal region; presumptive neural retina; and spinal cord neural tube. Human ortholog(s) of this gene implicated in dilated cardiomyopathy; episodic ataxia; episodic ataxia type 5; and idiopathic generalized epilepsy 9. Orthologous to human CACNB4 (calcium voltage-gated channel auxiliary subunit beta 4).

Ensembl:

ensembl_id ENSDART00000017833

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075178 lncRNA upstream 50021 38021890 ~ 38024061 (+) True XLOC_037326
TCONS_00075177 lncRNA upstream 565809 37506959 ~ 37508273 (+) True XLOC_037322
TCONS_00075176 lncRNA upstream 581168 37475147 ~ 37492914 (+) True XLOC_037321
TCONS_00075175 lncRNA upstream 1082231 36991163 ~ 36991851 (+) True XLOC_037315
TCONS_00075174 lncRNA upstream 1141550 36928055 ~ 36932532 (+) True XLOC_037312
TCONS_00073443 lncRNA downstream 28515 38158600 ~ 38161207 (+) False XLOC_037329
TCONS_00073452 lncRNA downstream 162834 38292919 ~ 38296930 (+) False XLOC_037333
TCONS_00073455 lncRNA downstream 177601 38307686 ~ 38308570 (+) True XLOC_037333
TCONS_00073462 lncRNA downstream 282663 38412748 ~ 38418111 (+) True XLOC_037337
TCONS_00073463 lncRNA downstream 289927 38420012 ~ 38421036 (+) False XLOC_037338
TCONS_00073438 mRNA upstream 8935 38043337 ~ 38065147 (+) True XLOC_037327
TCONS_00073434 mRNA upstream 211519 37850360 ~ 37862563 (+) False XLOC_037324
TCONS_00073435 mRNA upstream 213589 37850424 ~ 37860493 (+) False XLOC_037324
TCONS_00073436 mRNA upstream 217175 37850446 ~ 37856907 (+) True XLOC_037324
TCONS_00073433 mRNA upstream 233732 37754845 ~ 37840350 (+) True XLOC_037323
TCONS_00073442 mRNA downstream 28485 38158570 ~ 38162095 (+) False XLOC_037329
TCONS_00073444 mRNA downstream 28518 38158603 ~ 38161066 (+) False XLOC_037329
TCONS_00073448 mRNA downstream 33791 38163876 ~ 38291809 (+) False XLOC_037332
TCONS_00073449 mRNA downstream 37927 38168012 ~ 38289987 (+) False XLOC_037332
TCONS_00073450 mRNA downstream 143148 38273233 ~ 38276461 (+) False XLOC_037332
TCONS_00073437 other upstream 196532 37877434 ~ 37877550 (+) True XLOC_037325
TCONS_00073432 other upstream 662096 37411870 ~ 37411986 (+) True XLOC_037320
TCONS_00073428 other upstream 892525 37181440 ~ 37181557 (+) True XLOC_037317
TCONS_00073423 other upstream 1276248 36794719 ~ 36797834 (+) True XLOC_037311
TCONS_00073422 other upstream 1276254 36794719 ~ 36797828 (+) False XLOC_037311
TCONS_00073445 other downstream 28713 38158798 ~ 38161649 (+) True XLOC_037329
TCONS_00073446 other downstream 30361 38160446 ~ 38160572 (+) True XLOC_037330
TCONS_00073447 other downstream 31178 38161263 ~ 38161389 (+) True XLOC_037331
TCONS_00073451 other downstream 149298 38279383 ~ 38286788 (+) True XLOC_037332
TCONS_00073453 other downstream 162862 38292947 ~ 38311747 (+) False XLOC_037333

Expression Profile

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