RNA id: TCONS_00073442


Basic Information

Item Value
RNA id TCONS_00073442
length 1344
RNA type mRNA
GC content 0.41
exon number 6
gene id XLOC_037329
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38158570 ~ 38162095 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttgaattgtcGCTTGCATTAGCAGTTTCCTGAACGAGGCACAACGTGGTTTTAGGAGAAGCCATACGACAGTAGGTTCAAAACgtttagctttatttatttgaccactgTTAGATTTCAATATGACAGAAGGCAAATCATCAGACAAGCCGGCGAAAAGACTGCTGGCTCTGAATCCGAAAGAGGACGCAGAATTTCAGAAGAAAGTGCAGCAAGTGAAGAAGCGTCCTCAAACGGGTCAAACACTTAGTCCAGGAGTGCTGTATGTTGGTCATCTTCCTCGAGGACTGTTTGAGCCTCAGTTGAAATCTTACTTTGAGCAGTTTGGCAAAGTCTTACGATTGAGAGTTTCCAGGAGTAAAAAGACTGGTGGGAGCAAAGGCTATGGATTTGTGGAGTTTGAGTGTGATGAAGTGGCTAAGATTGTGGCTGAAACCATGAACAACTACCTTATGGGAGAACGCATTATAAAATGTCACGTTATTCCACCTGAGAAGGTTCATGAAAAGCTCTTTGTCGGCTCTATTGCTGGCTTCAAGAAGCCAAAGTATCCTGCAGTGACTCGGtataacaaaacacacacagaagaTGATGTGAAGAAAGTTGGCACAAAGCTTTTAAGCAAAGAGTCTAAGCTGCGCAAGAGACTGGCAGCAAAAGGCATTGACTATGATTTCCCAGGATTTgCAGCACAGATTCCAGCTAAAAAGGCTCCATCAGAAGCAAATGTTTCAGTGTGCAGTGAGGATGTAACTCCAGTGTGCACACCTTCACTTTTGGAGAGGAGAAAGTCTCTCAGAGTTGaggatgatgatgttgatgatgaaatAGTCATCAAAGTCAAACCACTCCCAGAAAACAGTGATGATGTGGAAGAAAGTGAGGAAGAGTCTGCTGAAGAGGATGAAGGTGAAGAGGAGGAAGCGGCTTAAAAGGAGAATTTAGTGACTAATAAAGACTTTATTCGCTGATTCAGAAGGGGACGCTGGACTCGCTTTTCAGAGCCATTTGTATGCGATTAGTTCTCAGTTCTCCCCTAAGGCTGGAGAAGAGGACCACACATATTACTCGCACACATTATCCTGATTGTCAGGAATCTGTTGATTTGAGGCGTGTTATGCAGAGTTTGTGCCCGTGACCTTTTAAGGGTACAGTGTGGTTGACCATAGAGTTGCTGAAATGACTGTATTAATCAAAGCAGATGTATAGTGttaatatgaaaataattattttcattgtATTTGACACAATTTCTGTCCACATATGTTGCATTGCAATGTTTGTAAAACATGTTTAAACcgtaaaataaactgttttaataaTTGTAAAGCATAATTTACTGAA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00910 Nitrogen metabolism
ko00625 Chloroalkane and chloroalkene degradation

ZFIN:

id description
ZDB-GENE-021231-4 Predicted to enable RNA binding activity. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; brain; eye; immature eye; and segmental plate. Orthologous to human NIFK (nucleolar protein interacting with the FHA domain of MKI67).

Ensembl:

ensembl_id ENSDART00000059549

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075178 lncRNA upstream 134509 38021890 ~ 38024061 (+) True XLOC_037326
TCONS_00075177 lncRNA upstream 650297 37506959 ~ 37508273 (+) True XLOC_037322
TCONS_00075176 lncRNA upstream 665656 37475147 ~ 37492914 (+) True XLOC_037321
TCONS_00075175 lncRNA upstream 1166719 36991163 ~ 36991851 (+) True XLOC_037315
TCONS_00075174 lncRNA upstream 1226038 36928055 ~ 36932532 (+) True XLOC_037312
TCONS_00073452 lncRNA downstream 130824 38292919 ~ 38296930 (+) False XLOC_037333
TCONS_00073455 lncRNA downstream 145591 38307686 ~ 38308570 (+) True XLOC_037333
TCONS_00073462 lncRNA downstream 250653 38412748 ~ 38418111 (+) True XLOC_037337
TCONS_00073463 lncRNA downstream 257917 38420012 ~ 38421036 (+) False XLOC_037338
TCONS_00073469 lncRNA downstream 307946 38470041 ~ 38470807 (+) False XLOC_037341
TCONS_00073439 mRNA upstream 28485 38074082 ~ 38130085 (+) False XLOC_037328
TCONS_00073441 mRNA upstream 29211 38088331 ~ 38129359 (+) True XLOC_037328
TCONS_00073440 mRNA upstream 29225 38075851 ~ 38129345 (+) False XLOC_037328
TCONS_00073438 mRNA upstream 93423 38043337 ~ 38065147 (+) True XLOC_037327
TCONS_00073434 mRNA upstream 296007 37850360 ~ 37862563 (+) False XLOC_037324
TCONS_00073448 mRNA downstream 1781 38163876 ~ 38291809 (+) False XLOC_037332
TCONS_00073449 mRNA downstream 5917 38168012 ~ 38289987 (+) False XLOC_037332
TCONS_00073450 mRNA downstream 111138 38273233 ~ 38276461 (+) False XLOC_037332
TCONS_00073454 mRNA downstream 130852 38292947 ~ 38311750 (+) False XLOC_037333
TCONS_00073456 mRNA downstream 152371 38314466 ~ 38352220 (+) True XLOC_037334
TCONS_00073437 other upstream 281020 37877434 ~ 37877550 (+) True XLOC_037325
TCONS_00073432 other upstream 746584 37411870 ~ 37411986 (+) True XLOC_037320
TCONS_00073428 other upstream 977013 37181440 ~ 37181557 (+) True XLOC_037317
TCONS_00073423 other upstream 1360736 36794719 ~ 36797834 (+) True XLOC_037311
TCONS_00073422 other upstream 1360742 36794719 ~ 36797828 (+) False XLOC_037311
TCONS_00073451 other downstream 117288 38279383 ~ 38286788 (+) True XLOC_037332
TCONS_00073453 other downstream 130852 38292947 ~ 38311747 (+) False XLOC_037333
TCONS_00073484 other downstream 522776 38684871 ~ 38707510 (+) False XLOC_037347
TCONS_00073487 other downstream 575517 38737612 ~ 38744774 (+) False XLOC_037348
TCONS_00073489 other downstream 624833 38786928 ~ 38787044 (+) True XLOC_037349

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_05411199_05413237.mRNA True 1246 mRNA 0.41 6 CI01000009 5411199 ~ 5413673 (+)