Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00073443 |
| length | 809 |
| lncRNA type | retained_intron |
| GC content | 0.42 |
| exon number | 4 |
| gene id | XLOC_037329 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 38158570 ~ 38162095 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007275 | multicellular organism development | biological_process |
| GO:0000463 | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-021231-4 | Predicted to enable RNA binding activity. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; brain; eye; immature eye; and segmental plate. Orthologous to human NIFK (nucleolar protein interacting with the FHA domain of MKI67). |
| ensembl_id | ENSDART00000133549 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00075178 | lncRNA | upstream | 134539 | 38021890 ~ 38024061 (+) | True | XLOC_037326 |
| TCONS_00075177 | lncRNA | upstream | 650327 | 37506959 ~ 37508273 (+) | True | XLOC_037322 |
| TCONS_00075176 | lncRNA | upstream | 665686 | 37475147 ~ 37492914 (+) | True | XLOC_037321 |
| TCONS_00075175 | lncRNA | upstream | 1166749 | 36991163 ~ 36991851 (+) | True | XLOC_037315 |
| TCONS_00075174 | lncRNA | upstream | 1226068 | 36928055 ~ 36932532 (+) | True | XLOC_037312 |
| TCONS_00073452 | lncRNA | downstream | 131712 | 38292919 ~ 38296930 (+) | False | XLOC_037333 |
| TCONS_00073455 | lncRNA | downstream | 146479 | 38307686 ~ 38308570 (+) | True | XLOC_037333 |
| TCONS_00073462 | lncRNA | downstream | 251541 | 38412748 ~ 38418111 (+) | True | XLOC_037337 |
| TCONS_00073463 | lncRNA | downstream | 258805 | 38420012 ~ 38421036 (+) | False | XLOC_037338 |
| TCONS_00073469 | lncRNA | downstream | 308834 | 38470041 ~ 38470807 (+) | False | XLOC_037341 |
| TCONS_00073439 | mRNA | upstream | 28515 | 38074082 ~ 38130085 (+) | False | XLOC_037328 |
| TCONS_00073441 | mRNA | upstream | 29241 | 38088331 ~ 38129359 (+) | True | XLOC_037328 |
| TCONS_00073440 | mRNA | upstream | 29255 | 38075851 ~ 38129345 (+) | False | XLOC_037328 |
| TCONS_00073438 | mRNA | upstream | 93453 | 38043337 ~ 38065147 (+) | True | XLOC_037327 |
| TCONS_00073434 | mRNA | upstream | 296037 | 37850360 ~ 37862563 (+) | False | XLOC_037324 |
| TCONS_00073448 | mRNA | downstream | 2669 | 38163876 ~ 38291809 (+) | False | XLOC_037332 |
| TCONS_00073449 | mRNA | downstream | 6805 | 38168012 ~ 38289987 (+) | False | XLOC_037332 |
| TCONS_00073450 | mRNA | downstream | 112026 | 38273233 ~ 38276461 (+) | False | XLOC_037332 |
| TCONS_00073454 | mRNA | downstream | 131740 | 38292947 ~ 38311750 (+) | False | XLOC_037333 |
| TCONS_00073456 | mRNA | downstream | 153259 | 38314466 ~ 38352220 (+) | True | XLOC_037334 |
| TCONS_00073437 | other | upstream | 281050 | 37877434 ~ 37877550 (+) | True | XLOC_037325 |
| TCONS_00073432 | other | upstream | 746614 | 37411870 ~ 37411986 (+) | True | XLOC_037320 |
| TCONS_00073428 | other | upstream | 977043 | 37181440 ~ 37181557 (+) | True | XLOC_037317 |
| TCONS_00073423 | other | upstream | 1360766 | 36794719 ~ 36797834 (+) | True | XLOC_037311 |
| TCONS_00073422 | other | upstream | 1360772 | 36794719 ~ 36797828 (+) | False | XLOC_037311 |
| TCONS_00073447 | other | downstream | 56 | 38161263 ~ 38161389 (+) | True | XLOC_037331 |
| TCONS_00073451 | other | downstream | 118176 | 38279383 ~ 38286788 (+) | True | XLOC_037332 |
| TCONS_00073453 | other | downstream | 131740 | 38292947 ~ 38311747 (+) | False | XLOC_037333 |
| TCONS_00073484 | other | downstream | 523664 | 38684871 ~ 38707510 (+) | False | XLOC_037347 |
| TCONS_00073487 | other | downstream | 576405 | 38737612 ~ 38744774 (+) | False | XLOC_037348 |
