RNA id: TCONS_00073449


Basic Information

Item Value
RNA id TCONS_00073449
length 4608
RNA type mRNA
GC content 0.52
exon number 40
gene id XLOC_037332
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38163876 ~ 38291809 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGCCCAATATGGAGTACTGTCTGACCCAGGTGCTACAGAAGGATGTTGCGCGAAGGTTGCAGATGGGTCCGGAGCTCATCGACTACATCACAGATGCTGAAAAGTGTCAGGACTTGGAGAGTGACCAGACTGCGCTGGATAAAATGGTGGACGGTATTGCCACCTCATGGGTTAACTCCAGCAACTTTAAGttGGCGTTGTTGGGAATGGACCTTCTATCTGCCTTAGTGACCAGATTACAGGACCGATTTCGGCCCCAAGTTGGTACAGTTTTACCTAGCTTAATAGATCGGTTGGGCGATGCCAAAGATCAAGTCAGAGACCAAGATCAAATCCTGCTGCTGAAGATTATGGAGCAGTCAGCTACACCTCAGTACATATGGGACAGAATGCTGGGGGGTTTCAAGCACAAAAACAACCGAACCAGAGAGGGAGTCTGTCTCTGTCTCATCTCAACACTCAACACATATGGTGCCCAAGGCTTAACTCTCAGCAAAATTGTACCACATATATGTAATCTACTTGGAGACCCCACAAGTCAGGTTCGAGATGCGGCCATGAACTGCCTTGTGGAAATATACAGACATGTTGGAGAAAAAGTTCGGATTGACCTTAGCAAAAAAGGACTGCCGCAATCAaggttGAATGTAATTTTCAGCAGATTTGATGAAGTCCAAAGATCTGGGAACATGATCCTCTCCTCAGGTTCAGATAAGAACTTTGATGACGAGGACTCAGTGGACGGGGGCAggtcctcctcctcttcctcttctaaGGGCTTCTCCAGCAGCAGGAGAGGAGGCAGCATGGGCTCAATGAGACGACCCAGTTCTGCCTCTGGATCCAGGGCTGCAGGAAAGGATGGTGCTAGTGCAGGAGCTTTGGATGAAGAGGATTTTATCAAGGCTTTTGAAGATGTACCTGCAGTGCAGATATATTCCAGTAAAGAGTTGGAGGATTCCTTAAATAAGATTCGGGAAATTCTGTCGGATGACAAACAAGACTGGGAGCACCGCGTCACTGCTTTGAAGAAAATGCGCTCACTGCTTATGGCTGGTGCGACTGAACATGAGGGTTTCATTCAACAGCTACGACTTTTAGAAGGTGCCTTCAAGATGTCGGCTAAAGATCTTCGGTCGCAAGTGGTTCGAGAGGCCTGCATCACATTAGGGCATCTGTCTTCATTGCTGGGGAATAAATTTGATCACGGGGCTGAAAGCATCATGCCGACGCTGCTCAACTTGGTGCCCAACAGCGCCAAAGTTATGGCCACATCTGGAGTGGCTGCCATCCGCCTCATCTTACGACATACACACTTCCCTCGCCTTATCCCGATCATCACCAGCAACTGCACTTCTAAATCCGTGGCTGTTCGACGACGATGTTACGAGTTTTTAGACCTGTTATTGCAAGAATGGCAGACACACACTCTAGAGAGGCATGTGGCGGTTCTCACCGAGACCATCAAGAAGGGGATCCATGATGCTGACTCAGAGGCCAGATCTGTGGCCAGAAAGTGTTATTGGGGATTCCATGGCCATTTCAGTCGGGAGGCGGAGCACCTGTTTCAGGCGTTGGAGTCGACCTATCAGAAGGCCCTCCAGTCTCACCTGAAGAGTTCGGACAGTATAGTGTCTCTACCGCAGTCGGACCGCTCCTCCTCAAGCTCACAGGAGAGCCTCAATCGACCGCTGTCAGTAAAGACGGTCATTGGCGGCCCTGTTACAAGAAGTAAAGTGATCGGCTCTCGGGTGTCCTCATCGTCTGGTTCCCTCCAGCGCTCTCGCAGTGACATTGACGTGAACGCAGCCTCCAGTGCCAAATCTCGCATGTCCACCGCAACCTCGCCATCCCCTTTCAGCGCAGCTGCAGCCCTGCCGCCAGGCTCCTATGCCTCTCTGGGTCGTGTTCGGACCAGAAGGCAGAGCTCAGGGAGTGCGGTAAGCGCCAACAGCACTGTGACAGACAGCCGTGGCCGAAGCAGAGCTAAAGTCGTGTCTCAGTCCCAGCGATCCAGATCAGCTAACACAACTAGTGCCGGCAGCCGATCCAGTTCACCAGGGAAGCTTTTGGGACATGCGTATGGCAGAATTCCTAGAGCCACTGCGCCAACAACTCCCTCAGACAAGTACTCCAGAATCCCACGAAGCCAGGGATGCAGCCGTGAGACCAGCCCCAATAGACTGGGCATAGCCCGGAGCAGTCGCATCCCTCGCCCCAGCATGAGTCAAGGGTGCAGCCGTGACACCAGTCGCGAGAGCAGCCGCGACACCAGCCCCGCTCGGGGCTTCACTCCTCTGGATCGCTTTGGTCTGATCCATCAGGCTCGCATTTCTGCATCTGTCAATGCTATGAGGGTGCTGAACACTGGCACAGAAGTGGAGGCGGCCGTGGCTGATGCTTTGCGCAAGCCATTGAGAAGGAGGTATGAGTCTGACGACGATGCTAACAGCGATGCGTCCAGTGCCTGCTCAGAGCGGTCCTATAGTTCCCGTAATGGAGGTATTCCTCATTACCTGCGTCAGACAGAGGACGTGGCCGAGGTGCTCAACCACTGCGCTAGCTCCAACTGGTCTGAGAGGAAAGAGGGCCTGCTGGGCCTGCAGAACCTGCTGAAGAGTCAGCGTATTCTCAGTCGTGTAGAGCTGAAGAGGCTATGTGAGATCTTCACCAGGATGTTTGCAGATCCTCACAGCAAGAGAGTGTTCAGCATGTTCTTGGAGACACTAGTAGACTTCGTCACTGTGCACAGAGAGGATCTCCAGGACTGGCTCTTTGTGCTGCTCACTCAGCTGCTAAAGAAAATGGGAGCTGACCTCTTGGGCTCAGTCCAAGCCAAAGTCCAGAAGGCTCTGGACATCACAAGGGAGTCTTTTCCTTTCGACCAGCAGTTTAACATCCTCATGAGATTCATTGTTGATCAGACTCAAACCCCTAATCTCAAGGTGAAGGTGGCCATTCTGAAATACATCGAGTCTCTGGCACGGCAGATGGACCCTGGAGACTTTGTGAATTCAAGTGAGACAAGATTAGCCGTGTCTCGCATTATCACCTGGACCACAGAACCCAAGAGCTCGGATGTCAGAAAAGCCGCCCAGGTGGTGCTGATCTCGCTCTTTGAGCTGAACACTCCTGAGTTCACCATGCTGCTCGGCGCTCTGCCGAAAACATTCCAGGATGGAGCCACCAAACTCCTGCATAATCATCTCAAGAACTCTAGCAACACCAGCAACGTGAGTTCACCAAGCAATACAATGGGCCGCACACCAGCCCGGCACCCCACCAGCAGGACTAGTCCACTCACCTCACCCACAAACTGCTCTCATGGAGGTCTTTCGCCCAGTCGGTTGTGGGGTTGGGGTGTCGATGGGCTCTTAAAGCACCCCTCtccctctcctcctcctcctcctcctcctccttcgtCTCACTCCTCTATTCCTGCCGGTCCCTCCTTAAGGGCTTTACGCTGCGCTCTCTCTCCAAGTATGCTGGAATATGACACTGAGAACATGAATTCAGATGAGATCTTTAGTTCATTGCGTGGCGTCACAGAAGCCATCCAGAGTTTCAGCTACCGCAGCCAAGAAGACCTGAATGAGCCAATCAGACGCGATGGAAAAAAGGATGATGCTACTGGAAAAGAAGCAGCATCTCCGGGCTCTGATGCGAGACTGGGATTGGATGTAGTGGAAGGTGGTCGAACCGCTCTGGATAACAAGACCTCTCTTCTCAACACCCCGTCCCCGCGGTCTTTCGCTGGGCCCCGGTCCAGAGAGTTTGCACCCTACGGCTATGGAGACACAATCACAGCCTATGATAAAAGTGCCCTGAAAGAGGCCGTCTTTGATGACGATGTGGAGCAGTTCAGAGACTGTGActccactcattttgATCTGGTGGCTGACCTGCTGAAGGAGCTGTCCAATCACAATGAGCGTGTGGAGGAGAGGAAAGGAGCGCTGATCGAGCTGTTGAAGATCACCCGCGAGGACAGTCTGGCTGTGTGGGACGAACACTTCAAAACTATCCTACTGCTGCTGTTGGAGACACTTGGGGACAAGGATCACACTATTCGAGCTCTGGCTTTACGGGTGCTAAAAGAGATCCTGAGGAACCAACCAGCACGCTTCAAGAACTATGCAGAACTCACTATCATGAAAACACTAGAAGCCCATAAGGACTCACATAAAGAGGTGGTGAGGGCGGCTGAAGAAGCTGCTTCTACACTGGCAGGTTCCATCCACCCAGAGCAGTGCATAAAAGTGTTGTGCCCCATCGTCCAGACTGCAGACTATCCTATCAACCTTGCTGCTATTAAGATGCAGACTAAAGTGGTCGAGCGCATCACCAAGGAGTCCCTACATCAGCTGCTGCCAGACATCATCCCTGGCCTCTTACAAGGCTATGATAACACGGAAAGTAGCGTCCGCAAGGCCAGTGTCTTCTGTCTGGTGGCCATTTACTCTGTGATTGGTGAGGAGCTGAAGCCACACTTGGCCCAGCTCACAGGGAGCAAGATGAAGTTGCTAAATCTGTATATTAAGAGGGCCCAGACCACcaacagcaacagcagcagtTCTTCAGACGTGTCCTCTCACAGCTAG

Function

GO:

id name namespace
GO:0090307 mitotic spindle assembly biological_process
GO:0040001 establishment of mitotic spindle localization biological_process
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0000776 kinetochore cellular_component
GO:0072686 mitotic spindle cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0005828 kinetochore microtubule cellular_component
GO:0045180 basal cortex cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005881 cytoplasmic microtubule cellular_component
GO:0051010 microtubule plus-end binding molecular_function
GO:0008017 microtubule binding molecular_function
GO:0043515 kinetochore binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-520 Predicted to enable kinetochore binding activity and microtubule binding activity. Predicted to be involved in establishment of mitotic spindle localization and mitotic spindle assembly. Predicted to be located in Golgi apparatus; chromosome, centromeric region; and kinetochore microtubule. Predicted to be active in basal cortex; kinetochore; and microtubule cytoskeleton. Orthologous to human CLASP1 (cytoplasmic linker associated protein 1).

Ensembl:

ensembl_id ENSDART00000102445

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073443 lncRNA upstream 6805 38158600 ~ 38161207 (+) False XLOC_037329
TCONS_00075178 lncRNA upstream 143951 38021890 ~ 38024061 (+) True XLOC_037326
TCONS_00075177 lncRNA upstream 659739 37506959 ~ 37508273 (+) True XLOC_037322
TCONS_00075176 lncRNA upstream 675098 37475147 ~ 37492914 (+) True XLOC_037321
TCONS_00075175 lncRNA upstream 1176161 36991163 ~ 36991851 (+) True XLOC_037315
TCONS_00073452 lncRNA downstream 2932 38292919 ~ 38296930 (+) False XLOC_037333
TCONS_00073455 lncRNA downstream 17699 38307686 ~ 38308570 (+) True XLOC_037333
TCONS_00073462 lncRNA downstream 122761 38412748 ~ 38418111 (+) True XLOC_037337
TCONS_00073463 lncRNA downstream 130025 38420012 ~ 38421036 (+) False XLOC_037338
TCONS_00073469 lncRNA downstream 180054 38470041 ~ 38470807 (+) False XLOC_037341
TCONS_00073442 mRNA upstream 5917 38158570 ~ 38162095 (+) False XLOC_037329
TCONS_00073444 mRNA upstream 6946 38158603 ~ 38161066 (+) False XLOC_037329
TCONS_00073439 mRNA upstream 37927 38074082 ~ 38130085 (+) False XLOC_037328
TCONS_00073441 mRNA upstream 38653 38088331 ~ 38129359 (+) True XLOC_037328
TCONS_00073440 mRNA upstream 38667 38075851 ~ 38129345 (+) False XLOC_037328
TCONS_00073454 mRNA downstream 2960 38292947 ~ 38311750 (+) False XLOC_037333
TCONS_00073456 mRNA downstream 24479 38314466 ~ 38352220 (+) True XLOC_037334
TCONS_00073457 mRNA downstream 79885 38369872 ~ 38390990 (+) False XLOC_037335
TCONS_00073458 mRNA downstream 82229 38372216 ~ 38388864 (+) True XLOC_037335
TCONS_00073459 mRNA downstream 109925 38399912 ~ 38407176 (+) False XLOC_037336
TCONS_00073445 other upstream 6363 38158798 ~ 38161649 (+) True XLOC_037329
TCONS_00073447 other upstream 6623 38161263 ~ 38161389 (+) True XLOC_037331
TCONS_00073446 other upstream 7440 38160446 ~ 38160572 (+) True XLOC_037330
TCONS_00073437 other upstream 290462 37877434 ~ 37877550 (+) True XLOC_037325
TCONS_00073432 other upstream 756026 37411870 ~ 37411986 (+) True XLOC_037320
TCONS_00073453 other downstream 2960 38292947 ~ 38311747 (+) False XLOC_037333
TCONS_00073484 other downstream 394884 38684871 ~ 38707510 (+) False XLOC_037347
TCONS_00073487 other downstream 447625 38737612 ~ 38744774 (+) False XLOC_037348
TCONS_00073489 other downstream 496941 38786928 ~ 38787044 (+) True XLOC_037349
TCONS_00073497 other downstream 720445 39010432 ~ 39011384 (+) False XLOC_037351

Expression Profile

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