RNA id: TU45542


Basic Information

Item Value
RNA id TU45542
length 1362
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G34255
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 44738480 ~ 44740122 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGactcaatgaaataaaaactgaacgaAGAGACGTAAAGTGTCAATGTTTTATTCTTGAAGTTAAAATATAATGTGATTTCtgtacatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcaccctgACTCATTTACATTGACGTTGCCAGGaatacacatgcacgcacaggcacacacacacacacacacacacacacaccactgcagCTGTAAACACTGTACACACTcgattaaccctctgaggtttTGGTCATTTACATCGccacgttttggtttttaagcgttttgagttttgagccaaaagtgatGACCGTGCACCGACATCCCGGTATACTGGGcgtaaacaggaggcagcgtggagactccgccccctgctggtagttacCATGGTAACGTTACGAGCTttaagtctcagagaacgagtgGTCGTGACCGATGAGAACCAATCAGGACGGAGAAACATTGGCGTcagttgagactgcaacacaacccgcAGATTACCAAACCACAaagggtcagaagtgtttccaaatgtctccggtttaggggacTCAGacacgccagagcagggggaatgagacggggaaacgccagagaagggggaatgagagggggaaacaccagagcagggggaatgagacgGGGAAACGCCAGAGAAGGGGGaacgagagggggaaacaccagaacaGGGGGAATGAGAgggggaaacgccagagcaggaggaatgagagggggaaacgtagcagacgaaattcctttttaaaccaaaacgtagcggtgTAAATGGAGCCTCAATCTTGACCCAAAACGACCTTTTTTAGAAGCATTTGCGTTGGGTTCAGGTCTGGTTTTCTCTTTCAGGTTTGGTCTGGTTGGGTCCAACTTTTCACACTTTACAGAAGATTTTGTTTCCTCGATAAAACAGTCGCACGCACATGAACACATCGGCACTGTTGGCATAGCAACAAAGCACAGTAATACCCCCGTGGACCGTCGAAAGATGACTGAATCTGCAAGCGCCTCTCAGACagttttttctcattttaaagaGTTTATCTGGTTAAAGAAGAGTCCTGGTTGTAGAGAGGAGGTTAAACTCGCCCCTCAGTCCTCctgattttcttcttctctcattCTTTTCAGCGTCTCTTCCCGTCTTTCTCCCAGTTGGTGTGGAGCAGCGCCGGGTCTCTGCTCGTCAGCCTCCAAAATGGCTTCCAGATAAAGTTCAGCTTGTGTTGTGATCAGGCCATCAGGACACCTGCAggcaggagacagaaagagggtgGAGTCAGTAGTTAGCACAATGCTAAcgtcttttaaactgaccgttAAAAATACCGTAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45425 lncRNA downstream 47619 44689909 ~ 44690861 (-) True G34183
TU45401 lncRNA downstream 116395 44621676 ~ 44622085 (-) True G34164
TU45400 lncRNA downstream 132476 44605602 ~ 44606004 (-) True G34163
TU45386 lncRNA downstream 246108 44492140 ~ 44492372 (-) True G34149
TU45385 lncRNA downstream 246382 44491571 ~ 44492098 (-) True G34148
TU45547 lncRNA upstream 32733 44772855 ~ 44773317 (-) True G34260
TU45554 lncRNA upstream 130987 44871109 ~ 44906359 (-) True LOC120556527
TU45550 lncRNA upstream 138166 44878288 ~ 44887806 (-) False LOC120556527
TU45560 lncRNA upstream 143623 44883745 ~ 44884428 (-) False G34270
TU45559 lncRNA upstream 144040 44884162 ~ 44924390 (-) True G34270
XM_039795281.1 mRNA downstream 54759 44679054 ~ 44683721 (-) True LOC120556004
XM_039795598.1 mRNA downstream 87550 44533423 ~ 44650930 (-) True LOC120556176
XM_039795599.1 mRNA downstream 167125 44533423 ~ 44571355 (-) False LOC120556176
XM_039795877.1 mRNA downstream 261213 44446183 ~ 44477267 (-) False LOC120556335
XM_039795778.1 mRNA upstream 1052 44741174 ~ 44743918 (-) True il17a/f1
XM_039795614.1 mRNA upstream 76590 44816712 ~ 44826908 (-) True gtf2a2
XM_039796170.1 mRNA upstream 137878 44878000 ~ 44906360 (-) False LOC120556527
XM_039796171.1 mRNA upstream 211184 44951306 ~ 44959853 (-) True LOC120556528
XM_039795776.1 mRNA upstream 326660 45066782 ~ 45089495 (-) True LOC120556292
TU45304 other downstream 649057 44085426 ~ 44089423 (-) True G34078
unassigned_transcript_148 other downstream 801432 43936976 ~ 43937048 (-) True trnav-uac
TU45172 other downstream 925255 43774610 ~ 43813225 (-) False LOC120556522
unassigned_transcript_147 other downstream 1210827 43527581 ~ 43527653 (-) True trnaw-cca_1
TU45036 other downstream 1281633 43452712 ~ 43456847 (-) True G33914
TU45552 other upstream 51860 44791982 ~ 44915666 (-) False LOC120556527
TU45551 other upstream 147760 44887882 ~ 44890809 (-) False LOC120556527
TU45959 other upstream 398534 45138656 ~ 45180300 (-) False G34518
TU45966 other upstream 398534 45138656 ~ 45180300 (-) False G34518
TU45969 other upstream 398534 45138656 ~ 45180300 (-) False G34518

Expression Profile