Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00073450 |
| length | 190 |
| RNA type | mRNA |
| GC content | 0.56 |
| exon number | 3 |
| gene id | XLOC_037332 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 38163876 ~ 38291809 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0090307 | mitotic spindle assembly | biological_process |
| GO:0040001 | establishment of mitotic spindle localization | biological_process |
| GO:0031110 | regulation of microtubule polymerization or depolymerization | biological_process |
| GO:0000226 | microtubule cytoskeleton organization | biological_process |
| GO:0000776 | kinetochore | cellular_component |
| GO:0072686 | mitotic spindle | cellular_component |
| GO:0005815 | microtubule organizing center | cellular_component |
| GO:0005828 | kinetochore microtubule | cellular_component |
| GO:0045180 | basal cortex | cellular_component |
| GO:0005876 | spindle microtubule | cellular_component |
| GO:0005881 | cytoplasmic microtubule | cellular_component |
| GO:0051010 | microtubule plus-end binding | molecular_function |
| GO:0008017 | microtubule binding | molecular_function |
| GO:0043515 | kinetochore binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-081104-520 | Predicted to enable kinetochore binding activity and microtubule binding activity. Predicted to be involved in establishment of mitotic spindle localization and mitotic spindle assembly. Predicted to be located in Golgi apparatus; chromosome, centromeric region; and kinetochore microtubule. Predicted to be active in basal cortex; kinetochore; and microtubule cytoskeleton. Orthologous to human CLASP1 (cytoplasmic linker associated protein 1). |
| ensembl_id | ENSDART00000142853 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00073443 | lncRNA | upstream | 112026 | 38158600 ~ 38161207 (+) | False | XLOC_037329 |
| TCONS_00075178 | lncRNA | upstream | 249172 | 38021890 ~ 38024061 (+) | True | XLOC_037326 |
| TCONS_00075177 | lncRNA | upstream | 764960 | 37506959 ~ 37508273 (+) | True | XLOC_037322 |
| TCONS_00075176 | lncRNA | upstream | 780319 | 37475147 ~ 37492914 (+) | True | XLOC_037321 |
| TCONS_00075175 | lncRNA | upstream | 1281382 | 36991163 ~ 36991851 (+) | True | XLOC_037315 |
| TCONS_00073452 | lncRNA | downstream | 16458 | 38292919 ~ 38296930 (+) | False | XLOC_037333 |
| TCONS_00073455 | lncRNA | downstream | 31225 | 38307686 ~ 38308570 (+) | True | XLOC_037333 |
| TCONS_00073462 | lncRNA | downstream | 136287 | 38412748 ~ 38418111 (+) | True | XLOC_037337 |
| TCONS_00073463 | lncRNA | downstream | 143551 | 38420012 ~ 38421036 (+) | False | XLOC_037338 |
| TCONS_00073469 | lncRNA | downstream | 193580 | 38470041 ~ 38470807 (+) | False | XLOC_037341 |
| TCONS_00073442 | mRNA | upstream | 111138 | 38158570 ~ 38162095 (+) | False | XLOC_037329 |
| TCONS_00073444 | mRNA | upstream | 112167 | 38158603 ~ 38161066 (+) | False | XLOC_037329 |
| TCONS_00073439 | mRNA | upstream | 143148 | 38074082 ~ 38130085 (+) | False | XLOC_037328 |
| TCONS_00073441 | mRNA | upstream | 143874 | 38088331 ~ 38129359 (+) | True | XLOC_037328 |
| TCONS_00073440 | mRNA | upstream | 143888 | 38075851 ~ 38129345 (+) | False | XLOC_037328 |
| TCONS_00073454 | mRNA | downstream | 16486 | 38292947 ~ 38311750 (+) | False | XLOC_037333 |
| TCONS_00073456 | mRNA | downstream | 38005 | 38314466 ~ 38352220 (+) | True | XLOC_037334 |
| TCONS_00073457 | mRNA | downstream | 93411 | 38369872 ~ 38390990 (+) | False | XLOC_037335 |
| TCONS_00073458 | mRNA | downstream | 95755 | 38372216 ~ 38388864 (+) | True | XLOC_037335 |
| TCONS_00073459 | mRNA | downstream | 123451 | 38399912 ~ 38407176 (+) | False | XLOC_037336 |
| TCONS_00073445 | other | upstream | 111584 | 38158798 ~ 38161649 (+) | True | XLOC_037329 |
| TCONS_00073447 | other | upstream | 111844 | 38161263 ~ 38161389 (+) | True | XLOC_037331 |
| TCONS_00073446 | other | upstream | 112661 | 38160446 ~ 38160572 (+) | True | XLOC_037330 |
| TCONS_00073437 | other | upstream | 395683 | 37877434 ~ 37877550 (+) | True | XLOC_037325 |
| TCONS_00073432 | other | upstream | 861247 | 37411870 ~ 37411986 (+) | True | XLOC_037320 |
| TCONS_00073451 | other | downstream | 2922 | 38279383 ~ 38286788 (+) | True | XLOC_037332 |
| TCONS_00073453 | other | downstream | 16486 | 38292947 ~ 38311747 (+) | False | XLOC_037333 |
| TCONS_00073484 | other | downstream | 408410 | 38684871 ~ 38707510 (+) | False | XLOC_037347 |
| TCONS_00073487 | other | downstream | 461151 | 38737612 ~ 38744774 (+) | False | XLOC_037348 |
| TCONS_00073489 | other | downstream | 510467 | 38786928 ~ 38787044 (+) | True | XLOC_037349 |
