RNA id: TCONS_00073453


Basic Information

Item Value
RNA id TCONS_00073453
length 1990
RNA type nonsense_mediated_decay
GC content 0.45
exon number 15
gene id XLOC_037333
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38292919 ~ 38311750 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTGCAGGTGGCGGACGGACACTCGCGGGTCAGCTGACCGTCGGCCGTCACGCGGGATAAAAGACCGCCGACTCGGACACTTCTGGAGAGACTTTGTGGCTCTCACGGTTCCTTCACCGGCGACCTCGCGTTTTACTGTACTCTTATTTCTGGGATAGGAAAGTAGCAGAGCTGGAGAGTATGCTGTTTTGGCACAGCCATCCTGAAAACTACCAGCAGCACGCGCAAAACACTTACATCAGAGATGCTCTTGCTCCGTTTCTCAAGCATGAAGAAGAACATCAGGCTGCAGAGATCGGAGCATCTCCTTTTCATTATGTGCTTTGTGCAGCCACTTCTCCAGCTGTGAAACTCCATGATGAAACACTCACATATCTGAATCAAGGTCAGTCCTATGAAATCCGTATGCTTAACGGGAAGCTGGTGGAGTATACAGATGTAAGCAGCAAATATGTAAAGAGCATTGTGCGTGTTGTTTTTCATGACCGGCGGCTGCAGTACACAGAGCATCAGCAGCTGGAGGGATGGAGGTGGAACCGGCCAGGAGACAGGATTCTGGATATAGATATCCCACTGTCAGTGGGCATAATAGAGCCTCACGCTCACCCACTGCAGCTCAACACCATCGAATTCCTCTGGGATCCTGACAAAAATGCCTCTGTCTTCATTCAGGTTAATTGCATTAGCACAGAGTTCACTCCTAGAAAACACGGTGGAGAGAAAGGTGTCCCTTTTCGGATTCAGATTGACACATTCACAGCCAGTGCACATGGAGAATACACTGAACACATGTGCTCCGCCAGCTGCCAGGTCAAAGTCTTTAAGCCTAAAGGTGCAGATCGCAAGCTCAAGACTGACAGAGAGAAGATCGAGAAGAAGAGTCTTCAGGATAAAGAAAAATACCAACTGTCCTATAAAACGACTGTGTTGACTGAGtgCTCCCCTTGGCCCGAAGCCCCATCCATCAGCAGCACGAGCAACACTCCATCACCTGCTTATCACAGCGCTCACACTTCCTACAGCTTTCCAGAGGAAAACTGCTCTCCAGACCAGCATGGAGAGCCACTTCTGCCCAGCTGCTCTGATCACCTGTTGCCTTCGTCCTCCACACAGGACACACAGCAGTGGCTCCATCGTAACAGGTTCTCCTCTTTCTGCAGGCTCTTCTCTGGCTTCTCAGGTTCAGATCTGCTAAAAATGGGTCGAGATGACTTCATTCAGATCTGTGGTCCTGCTGATGGCATTCGTCTTTTCAATGCAATCAAAGGAAGGTGCATCCAGCCACGTCTCACTGTCTATGTCTCCCAGCTGCAGAACAGGATCCAGCCGCACACAAAAGCAGTGGGTGACGGCGCGAATACATGGCGTATATAGACAAGGGCCGAAGGGGATACATGTCTTGGTTTCAGATGAGATGGTGCAGAACTTTACAGAGGAGGCAAGCTTCACTATCAGCACTGTAAAAGATGACAGGAATGAAGGCTATCATGTTGTACTGAAGTGACTTGACGACTGAAGCATGGTCTGTAGCTTCTCTTTACGATACTGGACTGTTTTTCAGCTAAATATCACCTGGTGGAATGTGACACGAATGAATGTGGATGAGGTTTGTATGATGACTGTGCCTTACTCTCAGAGAGAATCCTCTGGACTGTTTTACTGGAAATTGATTCAAATGtttattgtgtttgtttatacatatttttgttCATATGTGTTTTATAGTAATTATTTTATCATGTGAAATGAAATTCTTGAAGTCTTTTCAAAGCATCGTCtgacatttattttctattttagagTTTTCAAAATagtaaaaagttaaatatatttaatgtattatgtTGTATGTTTCTAGAAAAAAACTCTAAttcaaaatgtagcattttaaaacGTTGATAAAGTCTCCTCTAACTGGAAATAATCTGTTTCATATTGGACAGGTTCTGTTGATCAGAatgaaaatattgaaataaaagtctttgCTCA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040704-58 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in hypophysis. Orthologous to human TFCP2L1 (transcription factor CP2 like 1).

Ensembl:

ensembl_id ENSDART00000040480

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073443 lncRNA upstream 131740 38158600 ~ 38161207 (+) False XLOC_037329
TCONS_00075178 lncRNA upstream 268886 38021890 ~ 38024061 (+) True XLOC_037326
TCONS_00075177 lncRNA upstream 784674 37506959 ~ 37508273 (+) True XLOC_037322
TCONS_00075176 lncRNA upstream 800033 37475147 ~ 37492914 (+) True XLOC_037321
TCONS_00075175 lncRNA upstream 1301096 36991163 ~ 36991851 (+) True XLOC_037315
TCONS_00073462 lncRNA downstream 101001 38412748 ~ 38418111 (+) True XLOC_037337
TCONS_00073463 lncRNA downstream 108265 38420012 ~ 38421036 (+) False XLOC_037338
TCONS_00073469 lncRNA downstream 158294 38470041 ~ 38470807 (+) False XLOC_037341
TCONS_00073476 lncRNA downstream 303856 38615603 ~ 38618331 (+) True XLOC_037344
TCONS_00074931 lncRNA downstream 1551506 39863253 ~ 39865672 (+) True XLOC_037353
TCONS_00073448 mRNA upstream 1138 38163876 ~ 38291809 (+) False XLOC_037332
TCONS_00073449 mRNA upstream 2960 38168012 ~ 38289987 (+) False XLOC_037332
TCONS_00073450 mRNA upstream 16486 38273233 ~ 38276461 (+) False XLOC_037332
TCONS_00073442 mRNA upstream 130852 38158570 ~ 38162095 (+) False XLOC_037329
TCONS_00073444 mRNA upstream 131881 38158603 ~ 38161066 (+) False XLOC_037329
TCONS_00073456 mRNA downstream 2719 38314466 ~ 38352220 (+) True XLOC_037334
TCONS_00073457 mRNA downstream 58125 38369872 ~ 38390990 (+) False XLOC_037335
TCONS_00073458 mRNA downstream 60469 38372216 ~ 38388864 (+) True XLOC_037335
TCONS_00073459 mRNA downstream 88165 38399912 ~ 38407176 (+) False XLOC_037336
TCONS_00073460 mRNA downstream 88168 38399915 ~ 38403471 (+) True XLOC_037336
TCONS_00073451 other upstream 6159 38279383 ~ 38286788 (+) True XLOC_037332
TCONS_00073445 other upstream 131298 38158798 ~ 38161649 (+) True XLOC_037329
TCONS_00073447 other upstream 131558 38161263 ~ 38161389 (+) True XLOC_037331
TCONS_00073446 other upstream 132375 38160446 ~ 38160572 (+) True XLOC_037330
TCONS_00073437 other upstream 415397 37877434 ~ 37877550 (+) True XLOC_037325
TCONS_00073484 other downstream 373124 38684871 ~ 38707510 (+) False XLOC_037347
TCONS_00073487 other downstream 425865 38737612 ~ 38744774 (+) False XLOC_037348
TCONS_00073489 other downstream 475181 38786928 ~ 38787044 (+) True XLOC_037349
TCONS_00073497 other downstream 698685 39010432 ~ 39011384 (+) False XLOC_037351
TCONS_00073498 other downstream 698698 39010445 ~ 39014598 (+) False XLOC_037351

Expression Profile

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