RNA id: TCONS_00073455


Basic Information

Item Value
RNA id TCONS_00073455
length 719
lncRNA type retained_intron
GC content 0.39
exon number 3
gene id XLOC_037333
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38292919 ~ 38311750 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTATCCTGTGGCCGCAAATGTGCTGAAGTCATTCAGAGCAGAGGCCTGTACACTTCCTACTAAGTGCTGACTGTTACAACCTTCAGAAAATTTTGTTGTCATCTTTTTCCATGCTACAGTCATTGTTGTTCTCTAATATTGATTAGTgtgttttttgcaaaataatgttttttttttttttaaatgtcttggttATTTTGGGTGTTCTGGTAGCATGGTATAGACGAAACAAAAACACCTTCAACTGTTGAGCAGTGAAGATGACATTATTTCAGAATGgttcaattatttataaattgttctctaattttgatcgcctgtgtatattattgttaatttaaaactagattatatacagttttatttccacacacacacgaaaaaatGTGTTATGGTTTCAGGTTCAGATCTGCTAAAAATGGGTCGAGATGACTTCATTCAGATCTGTGGTCCTGCTGATGGCATTCGTCTTTTCAATGCAATCAAAGGAAGGTGCATCCAGCCACGTCTCACTGTCTATGTCTCCCAGCTGCAGAACAGGATCCAGCCGCACACAAAAGCAGTGGGTGACGGCGTGTACCATGCACTCTACCTAGAGGACCTAACTGTCCTTGAGCTCACTGAGAAGATAGCCAATCTATATAATGTTCCCTCACAGCGAATACATGGCGTATATAGACAAGGGCCGAAGGGGATACATGTCTTGGTTTCAGATGAG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040704-58 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in hypophysis. Orthologous to human TFCP2L1 (transcription factor CP2 like 1).

Ensembl:

ensembl_id ENSDART00000139888

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073452 lncRNA upstream 10756 38292919 ~ 38296930 (+) False XLOC_037333
TCONS_00073443 lncRNA upstream 146479 38158600 ~ 38161207 (+) False XLOC_037329
TCONS_00075178 lncRNA upstream 283625 38021890 ~ 38024061 (+) True XLOC_037326
TCONS_00075177 lncRNA upstream 799413 37506959 ~ 37508273 (+) True XLOC_037322
TCONS_00075176 lncRNA upstream 814772 37475147 ~ 37492914 (+) True XLOC_037321
TCONS_00073462 lncRNA downstream 104178 38412748 ~ 38418111 (+) True XLOC_037337
TCONS_00073463 lncRNA downstream 111442 38420012 ~ 38421036 (+) False XLOC_037338
TCONS_00073469 lncRNA downstream 161471 38470041 ~ 38470807 (+) False XLOC_037341
TCONS_00073476 lncRNA downstream 307033 38615603 ~ 38618331 (+) True XLOC_037344
TCONS_00074931 lncRNA downstream 1554683 39863253 ~ 39865672 (+) True XLOC_037353
TCONS_00073448 mRNA upstream 15877 38163876 ~ 38291809 (+) False XLOC_037332
TCONS_00073449 mRNA upstream 17699 38168012 ~ 38289987 (+) False XLOC_037332
TCONS_00073450 mRNA upstream 31225 38273233 ~ 38276461 (+) False XLOC_037332
TCONS_00073442 mRNA upstream 145591 38158570 ~ 38162095 (+) False XLOC_037329
TCONS_00073444 mRNA upstream 146620 38158603 ~ 38161066 (+) False XLOC_037329
TCONS_00073456 mRNA downstream 5896 38314466 ~ 38352220 (+) True XLOC_037334
TCONS_00073457 mRNA downstream 61302 38369872 ~ 38390990 (+) False XLOC_037335
TCONS_00073458 mRNA downstream 63646 38372216 ~ 38388864 (+) True XLOC_037335
TCONS_00073459 mRNA downstream 91342 38399912 ~ 38407176 (+) False XLOC_037336
TCONS_00073460 mRNA downstream 91345 38399915 ~ 38403471 (+) True XLOC_037336
TCONS_00073451 other upstream 20898 38279383 ~ 38286788 (+) True XLOC_037332
TCONS_00073445 other upstream 146037 38158798 ~ 38161649 (+) True XLOC_037329
TCONS_00073447 other upstream 146297 38161263 ~ 38161389 (+) True XLOC_037331
TCONS_00073446 other upstream 147114 38160446 ~ 38160572 (+) True XLOC_037330
TCONS_00073437 other upstream 430136 37877434 ~ 37877550 (+) True XLOC_037325
TCONS_00073484 other downstream 376301 38684871 ~ 38707510 (+) False XLOC_037347
TCONS_00073487 other downstream 429042 38737612 ~ 38744774 (+) False XLOC_037348
TCONS_00073489 other downstream 478358 38786928 ~ 38787044 (+) True XLOC_037349
TCONS_00073497 other downstream 701862 39010432 ~ 39011384 (+) False XLOC_037351
TCONS_00073498 other downstream 701875 39010445 ~ 39014598 (+) False XLOC_037351

Expression Profile

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