RNA id: TCONS_00073457


Basic Information

Item Value
RNA id TCONS_00073457
length 2202
RNA type mRNA
GC content 0.47
exon number 17
gene id XLOC_037335
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38369872 ~ 38390990 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgcgatataggctaaattgtcctgtgtgtgtgtgtgtgtgtgtgtgtAATCTTGAAGCCATGAAGGCAGGGATGTTTTTTCGTAAGGTGAAGTCTCGTATGTGGAGGCGGCAGCGACACTATAAACTTCAGGATGACTGCAAGACTATCGCATATAAATCCAGCTGGGCAATAAACTCATACTCAACATtctCCATCAGTGATGTAGAGGCTGTTCGTGAGGGTCATCAGTCCGAGGCTCTCCTCGGTGTGGCAGACGAGTTTCCTCCAGACCGCTGCTTTACACTTGTGTTTCGCGGCCGTAAAGGAAACCTGGATCTGGTGGCCGAGTCTGCGGAGGAAGCTCAGGCCTGGATCCAGGGCGTCCGAGGCCTCATGGAGAACATGGAGAACATGGACGAGAGCACCAAACTTGACCAAtggatctcagactggttttccAAAGCAGACCGAAACAAGGATGGCCGAATCAATTTTAAAGAAGCTAAAAAACTACTGAAAATGATGAACATCGACATGAATGAAGAACATGCCTGCTGTCTTTTTAAGATGGCAGATAAGTCTCGGTCAGGAACCCTGGAGGATCAGGAGTTTGTGGAGTTTTATAAGATGCTCACTGAGAGAAGGGAAGTGCTGGATTTATTTCAGGATTATTCCAGTGACGGACAGATCCTGTCCCAGTGTGATCTGGAGGAGTTCCTGAGAGAGGAGCAGCTCGAGGGGGAGAGCAGTTATGAACATGCCCTTCAGCTTATTGATCGCTATGAGCCTTCAGAAACGGCCAGAATGAATCACTCGATGTCAGTCGATGGGTTCCTAATGTACCTGACGTCCCCTGAGGGATCCATCTTCAATCCAGAGCGGCAGGGCATCTTTCAGGACATGAGCCAATCTCTTGCCCACTATTACATCTCGTCCTCACACAACACTTACCTGATGGAGGACCAGCTAAAAGGACCAAGCAGCGTTGAGGCCTACATCCAGGCTCTGAAGCGCGGCTGCAGGTGTGTAGAGGTGGACTGCTGGAATGGAGCCAATGGGGAGCCAGTAGTTTATCATGGACACACGTTCACATCCAAGATTCTCCTCAAAGACGTGATCACTACTATTGCAAGTTATGCCTTTAAGGCTTCTGAGTATCCGCTCATCATATccattgagaaccactgcagtgTAGAGCAACAGAAAGTCATGGCTCAACAGTTCAGAGAAATTCTGGGCGATATGTTGCTGACCAGCACAGCAGACACTGAGGTTTCCAGTGAACTGCCATCCCCAGAGGCACTTAAGAGGAAAATCCTGTTAAAAGGGAAGAAGATTGGACACGAGTCAGAGAGCCCCACAGCTGAAGTCAGCGATGAAGACGAGGCAAAATCGAAGCAAAATCTGTGCAAGGAGCTCTCGGACATTATGTTCTGTAAAAGTGTACACTTCCACAGCTTTGAACACTCCAGAATCTCTGCTAAGCCTTATGAGATGTCATCGTTCTCTGAGTCTAAAGCCCGAAAATATTCAAAGGAAGCAGGTTCAGATTTTGTGCTGCATAACACCAGGCAGCTGATAAGAGTGTATCCAAGTGGAATGAGGACTGATTCATCAAATTACTGTCCAGTGGACATGTGGAGCATGGGATGCCAGATTGTGGCATTAAACTTCCAGACGGCAGGAATGGAAATGGATCTTAATGATGGGCTGTTTAGTCAGAATGGCTGCAGTGGATATGTTTTAAAACCTGAGATACTGCGCAACAGAGAGAGACGTTTTGATCCTGAAAAACCAGAGGAGCATGAGGATTACAACCCTTTAGTTATCAGTGGACAACAGCTGCCTAAACTAAAGCAAAACGAATGGTCCATTGTAGATCCCTTCGTAAGGGTGGAGATTTATGGCGTTCCTTTGGACCAAGCCAAACAGGAGACCAAATACATCGACAACAATGGTTTCAACCCATATTGGAATGAAAGTGTACAGTTCACCGTCCACACACCTGAGCTTGCACTGGTGCGTTTTGTAGTTGAAGACCATGACAAAGCCTCAAGGAATGACTTCATAGGGCAGTACACACTTCCATTGTCTTGTATTCAGCCAGGCTATCGCCATGTCCATCTGTTGTCCAAGGATGGAACAAGTATCCGTCCATCCTCCATATTCGTTCACATCAAAATCACAGATGCACTTAAAAAGACAGGTTCCTCCATGTGA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0007340 acrosome reaction biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0046488 phosphatidylinositol metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005509 calcium ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004629 phospholipase C activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080512-3 Predicted to enable phosphatidylinositol phospholipase C activity. Predicted to be involved in phosphatidylinositol-mediated signaling. Predicted to act upstream of or within several processes, including acrosome reaction; intracellular signal transduction; and phosphatidylinositol metabolic process. Predicted to be located in endoplasmic reticulum and nucleus. Orthologous to human PLCD4 (phospholipase C delta 4).

Ensembl:

ensembl_id ENSDART00000193914

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073455 lncRNA upstream 61302 38307686 ~ 38308570 (+) True XLOC_037333
TCONS_00073452 lncRNA upstream 72942 38292919 ~ 38296930 (+) False XLOC_037333
TCONS_00073443 lncRNA upstream 208665 38158600 ~ 38161207 (+) False XLOC_037329
TCONS_00075178 lncRNA upstream 345811 38021890 ~ 38024061 (+) True XLOC_037326
TCONS_00075177 lncRNA upstream 861599 37506959 ~ 37508273 (+) True XLOC_037322
TCONS_00073462 lncRNA downstream 21758 38412748 ~ 38418111 (+) True XLOC_037337
TCONS_00073463 lncRNA downstream 29022 38420012 ~ 38421036 (+) False XLOC_037338
TCONS_00073469 lncRNA downstream 79051 38470041 ~ 38470807 (+) False XLOC_037341
TCONS_00073476 lncRNA downstream 224613 38615603 ~ 38618331 (+) True XLOC_037344
TCONS_00074931 lncRNA downstream 1472263 39863253 ~ 39865672 (+) True XLOC_037353
TCONS_00073456 mRNA upstream 17652 38314466 ~ 38352220 (+) True XLOC_037334
TCONS_00073454 mRNA upstream 58122 38292947 ~ 38311750 (+) False XLOC_037333
TCONS_00073448 mRNA upstream 78063 38163876 ~ 38291809 (+) False XLOC_037332
TCONS_00073449 mRNA upstream 79885 38168012 ~ 38289987 (+) False XLOC_037332
TCONS_00073450 mRNA upstream 93411 38273233 ~ 38276461 (+) False XLOC_037332
TCONS_00073459 mRNA downstream 8922 38399912 ~ 38407176 (+) False XLOC_037336
TCONS_00073460 mRNA downstream 8925 38399915 ~ 38403471 (+) True XLOC_037336
TCONS_00073461 mRNA downstream 18001 38408991 ~ 38419140 (+) False XLOC_037337
TCONS_00073464 mRNA downstream 29038 38420028 ~ 38425491 (+) True XLOC_037338
TCONS_00073465 mRNA downstream 36582 38427572 ~ 38433916 (+) True XLOC_037339
TCONS_00073453 other upstream 58125 38292947 ~ 38311747 (+) False XLOC_037333
TCONS_00073451 other upstream 83084 38279383 ~ 38286788 (+) True XLOC_037332
TCONS_00073445 other upstream 208223 38158798 ~ 38161649 (+) True XLOC_037329
TCONS_00073484 other downstream 293881 38684871 ~ 38707510 (+) False XLOC_037347
TCONS_00073487 other downstream 346622 38737612 ~ 38744774 (+) False XLOC_037348
TCONS_00073489 other downstream 395938 38786928 ~ 38787044 (+) True XLOC_037349
TCONS_00073497 other downstream 619442 39010432 ~ 39011384 (+) False XLOC_037351
TCONS_00073498 other downstream 619455 39010445 ~ 39014598 (+) False XLOC_037351

Expression Profile

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