RNA id: TU45946



Basic Information


Item Value
RNA id TU45946
length 206
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G34513
representative True

Chromosome Information


Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 45110572 ~ 45110801 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


acatacacacacacatacacacatacatacatacatacatacatacatacatacacacatacacacatacacacatacatacacacatacacacatacatacatacacacactaccacgcacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU45944 lncRNA downstream 19301 45091054 ~ 45091271 (-) True G34511
TU45942 lncRNA downstream 44090 45063158 ~ 45066482 (-) True G34509
TU45939 lncRNA downstream 52443 45057919 ~ 45058129 (-) True G34506
TU45937 lncRNA downstream 82909 45027297 ~ 45027663 (-) True G34504
TU45936 lncRNA downstream 85679 45024604 ~ 45024893 (-) True G34503
TU45949 lncRNA upstream 20915 45131716 ~ 45136875 (-) True G34516
TU45961 lncRNA upstream 27855 45138656 ~ 45226732 (-) False G34518
TU45964 lncRNA upstream 27855 45138656 ~ 45181775 (-) False G34518
TU45967 lncRNA upstream 27855 45138656 ~ 45226732 (-) False G34518
TU45968 lncRNA upstream 27855 45138656 ~ 45271013 (-) False G34518
XM_039795776.1 mRNA downstream 21077 45066782 ~ 45089495 (-) True LOC120556292
XM_039796171.1 mRNA downstream 150719 44951306 ~ 44959853 (-) True LOC120556528
XM_039796170.1 mRNA downstream 204212 44878000 ~ 44906360 (-) False LOC120556527
XM_039795614.1 mRNA downstream 283664 44816712 ~ 44826908 (-) True gtf2a2
XM_039795778.1 mRNA downstream 366654 44741174 ~ 44743918 (-) True il17a/f1
XM_039794125.1 mRNA upstream 95867 45206668 ~ 45208281 (-) True LOC120555435
XM_039794126.1 mRNA upstream 100857 45211658 ~ 45229074 (-) True LOC120555436
XM_039794121.1 mRNA upstream 116548 45227349 ~ 45228948 (-) True LOC120555433
XM_039794120.1 mRNA upstream 130862 45241663 ~ 45243888 (-) True LOC120555432
XM_039794123.1 mRNA upstream 144433 45255234 ~ 45262720 (-) True LOC120555434
TU45552 other downstream 194906 44791982 ~ 44915666 (-) False LOC120556527
TU45551 other downstream 219763 44887882 ~ 44890809 (-) False LOC120556527
TU45304 other downstream 1021149 44085426 ~ 44089423 (-) True G34078
unassigned_transcript_148 other downstream 1173524 43936976 ~ 43937048 (-) True trnav-uac
TU45172 other downstream 1297347 43774610 ~ 43813225 (-) False LOC120556522
TU45959 other upstream 27855 45138656 ~ 45180300 (-) False G34518
TU45966 other upstream 27855 45138656 ~ 45180300 (-) False G34518
TU45969 other upstream 27855 45138656 ~ 45180300 (-) False G34518
TU45953 other upstream 68770 45179571 ~ 45180300 (-) False G34518
TU46016 other upstream 177004 45287805 ~ 45294207 (-) True G34551

Expression Profile