RNA id: TCONS_00073460


Basic Information

Item Value
RNA id TCONS_00073460
length 795
RNA type mRNA
GC content 0.47
exon number 5
gene id XLOC_037336
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38399912 ~ 38407176 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCAATCATTCTGCAATGATAGAGAACGCTTGCTTTCATGCACTTATATTTGATTGGCTTCTTTTTCCTTTGTTTTAAGCTAACAGGAGAAAAAGGTTGTTTGTAAATACGTGACCTTATTTACACTATCGATTTGGACTAGTTGGTGTTGGCACGGCACTTGCAGTTGCCAGAAAAGGAGCACAGGTTGGCATGATTTTCTTTCGGAGGCATTACATGATCACTCTGGAGGTTCcaagcaaagataaaagttacCACTGGCTCTTAAGCTGGATCACCAAACAtgccaaacacacacagcatCTGAGTGTAGAGACCTCATACATGCAGCACGAGAGTGGGAAAGTCCACACACAGTTTGACTTCCACCCAAGCCCAGGCAACCACATCATATGGTATGGAAGGAAGTGGATCAGAGTGGAGCGGGTCAGGGAGAAGCAGATGATGGACCTGCACACTGGAACGCCCTGGGAGTCTGTCACCTTTACTGCTTTGGGAAGAGACCGCCAGACATTCTTCAACATACTTCAGGAAGCACGTGAACTTGCTTTAAAGCAGGAAGAGGGCCGGACAGTGATGTACACTGCAATGGGAGCGGAGTGGAGACCCTTTGGTTTTCCAAGGAGAAGACGGCCGCTGTCTTCAGTAGTGCTGGAGAGTGGAGTGGCGGAGAGGATTGTGGATGATGTAAAGGAGTTCATAGGCAATCCTAAGTGGTACACTGACAGAGGCATTCCATACAGGAGGGGATATTTGCTGTATGGCCCACCTGGCTGTGGAAAGAGCAGCTTTAT

Function

GO:

id name namespace
GO:0034551 mitochondrial respiratory chain complex III assembly biological_process
GO:0032979 protein insertion into mitochondrial inner membrane from matrix biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-938 Predicted to enable ATP binding activity. Predicted to be involved in mitochondrial respiratory chain complex III assembly and protein insertion into mitochondrial inner membrane from matrix. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in Bjornstad syndrome; GRACILE syndrome; and mitochondrial complex III deficiency nuclear type 1. Orthologous to human BCS1L (BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone).

Ensembl:

ensembl_id ENSDART00000145892

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073455 lncRNA upstream 91345 38307686 ~ 38308570 (+) True XLOC_037333
TCONS_00073452 lncRNA upstream 102985 38292919 ~ 38296930 (+) False XLOC_037333
TCONS_00073443 lncRNA upstream 238708 38158600 ~ 38161207 (+) False XLOC_037329
TCONS_00075178 lncRNA upstream 375854 38021890 ~ 38024061 (+) True XLOC_037326
TCONS_00075177 lncRNA upstream 891642 37506959 ~ 37508273 (+) True XLOC_037322
TCONS_00073462 lncRNA downstream 9277 38412748 ~ 38418111 (+) True XLOC_037337
TCONS_00073463 lncRNA downstream 16541 38420012 ~ 38421036 (+) False XLOC_037338
TCONS_00073469 lncRNA downstream 66570 38470041 ~ 38470807 (+) False XLOC_037341
TCONS_00073476 lncRNA downstream 212132 38615603 ~ 38618331 (+) True XLOC_037344
TCONS_00074931 lncRNA downstream 1459782 39863253 ~ 39865672 (+) True XLOC_037353
TCONS_00073457 mRNA upstream 8925 38369872 ~ 38390990 (+) False XLOC_037335
TCONS_00073458 mRNA upstream 11051 38372216 ~ 38388864 (+) True XLOC_037335
TCONS_00073456 mRNA upstream 47695 38314466 ~ 38352220 (+) True XLOC_037334
TCONS_00073454 mRNA upstream 88165 38292947 ~ 38311750 (+) False XLOC_037333
TCONS_00073449 mRNA upstream 109928 38168012 ~ 38289987 (+) False XLOC_037332
TCONS_00073461 mRNA downstream 5520 38408991 ~ 38419140 (+) False XLOC_037337
TCONS_00073464 mRNA downstream 16557 38420028 ~ 38425491 (+) True XLOC_037338
TCONS_00073465 mRNA downstream 24101 38427572 ~ 38433916 (+) True XLOC_037339
TCONS_00073466 mRNA downstream 43033 38446504 ~ 38457413 (+) True XLOC_037340
TCONS_00073467 mRNA downstream 54335 38457806 ~ 38481481 (+) False XLOC_037341
TCONS_00073453 other upstream 88168 38292947 ~ 38311747 (+) False XLOC_037333
TCONS_00073451 other upstream 113127 38279383 ~ 38286788 (+) True XLOC_037332
TCONS_00073445 other upstream 238266 38158798 ~ 38161649 (+) True XLOC_037329
TCONS_00073484 other downstream 281400 38684871 ~ 38707510 (+) False XLOC_037347
TCONS_00073487 other downstream 334141 38737612 ~ 38744774 (+) False XLOC_037348
TCONS_00073489 other downstream 383457 38786928 ~ 38787044 (+) True XLOC_037349
TCONS_00073497 other downstream 606961 39010432 ~ 39011384 (+) False XLOC_037351
TCONS_00073498 other downstream 606974 39010445 ~ 39014598 (+) False XLOC_037351

Expression Profile

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