RNA id: TU45961


Basic Information

Item Value
RNA id TU45961
length 260
lncRNA type read_through
GC content 0.51
exon number 4
gene id G34518
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 45138656 ~ 45271013 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtgtctctgtgtgtgtgtctgtgtgtctgtgtgtctgtgtgtgtgcgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtctgtgtctgtgtgtctgtgtgtgtgtctgtgtgtgtctgtgtgtctgtgtgtgtgcgtgtgtgtgtctgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtctgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45949 lncRNA downstream 1781 45131716 ~ 45136875 (-) True G34516
TU45946 lncRNA downstream 27855 45110572 ~ 45110801 (-) True G34513
TU45944 lncRNA downstream 47385 45091054 ~ 45091271 (-) True G34511
TU45942 lncRNA downstream 72174 45063158 ~ 45066482 (-) True G34509
TU45939 lncRNA downstream 80527 45057919 ~ 45058129 (-) True G34506
TU45994 lncRNA upstream 1990 45228722 ~ 45229071 (-) True G34539
TU45975 lncRNA upstream 44220 45270952 ~ 45307793 (-) True G34521
TU45977 lncRNA upstream 44384 45271116 ~ 45306967 (-) True G34523
TU45974 lncRNA upstream 49559 45276291 ~ 45305717 (-) True G34520
TU45999 lncRNA upstream 53564 45280296 ~ 45296873 (-) True G34544
XM_039795776.1 mRNA downstream 49161 45066782 ~ 45089495 (-) True LOC120556292
XM_039796171.1 mRNA downstream 178803 44951306 ~ 44959853 (-) True LOC120556528
XM_039796170.1 mRNA downstream 232296 44878000 ~ 44906360 (-) False LOC120556527
XM_039795614.1 mRNA downstream 311748 44816712 ~ 44826908 (-) True gtf2a2
XM_039795778.1 mRNA downstream 394738 44741174 ~ 44743918 (-) True il17a/f1
XM_039794121.1 mRNA upstream 617 45227349 ~ 45228948 (-) True LOC120555433
XM_039794120.1 mRNA upstream 14931 45241663 ~ 45243888 (-) True LOC120555432
XM_039794123.1 mRNA upstream 28502 45255234 ~ 45262720 (-) True LOC120555434
XM_039794122.1 mRNA upstream 34166 45260898 ~ 45262720 (-) False LOC120555434
XM_039796173.1 mRNA upstream 154033 45380765 ~ 45385841 (-) True LOC120556531
TU45552 other downstream 222990 44791982 ~ 44915666 (-) False LOC120556527
TU45551 other downstream 247847 44887882 ~ 44890809 (-) False LOC120556527
TU45304 other downstream 1049233 44085426 ~ 44089423 (-) True G34078
unassigned_transcript_148 other downstream 1201608 43936976 ~ 43937048 (-) True trnav-uac
TU45172 other downstream 1325431 43774610 ~ 43813225 (-) False LOC120556522
TU46016 other upstream 61073 45287805 ~ 45294207 (-) True G34551
TU46107 other upstream 355765 45582497 ~ 45583082 (-) True G34617
TU46108 other upstream 355765 45582497 ~ 45583667 (-) False G34617
TU46073 other upstream 532756 45759488 ~ 45769788 (-) True G34584
TU46083 other upstream 627908 45854640 ~ 45857478 (-) True G34594

Expression Profile