Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00073463 |
| length | 882 |
| lncRNA type | retained_intron |
| GC content | 0.39 |
| exon number | 2 |
| gene id | XLOC_037338 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 38420012 ~ 38425491 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0008203 | cholesterol metabolic process | biological_process |
| GO:0036378 | calcitriol biosynthetic process from calciol | biological_process |
| GO:0009074 | aromatic amino acid family catabolic process | biological_process |
| GO:0046395 | carboxylic acid catabolic process | biological_process |
| GO:0044282 | small molecule catabolic process | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0016054 | organic acid catabolic process | biological_process |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | molecular_function |
| GO:0004497 | monooxygenase activity | molecular_function |
| GO:0005506 | iron ion binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0031073 | cholesterol 26-hydroxylase activity | molecular_function |
| GO:0020037 | heme binding | molecular_function |
| GO:0030343 | vitamin D3 25-hydroxylase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-081104-511 | Predicted to enable cholesterol 26-hydroxylase activity and vitamin D3 25-hydroxylase activity. Predicted to be involved in calcitriol biosynthetic process from calciol and cholesterol metabolic process. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in cerebrotendinous xanthomatosis. Orthologous to human CYP27A1 (cytochrome P450 family 27 subfamily A member 1). |
| ensembl_id | ENSDART00000139147 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00073462 | lncRNA | upstream | 1901 | 38412748 ~ 38418111 (+) | True | XLOC_037337 |
| TCONS_00073455 | lncRNA | upstream | 111442 | 38307686 ~ 38308570 (+) | True | XLOC_037333 |
| TCONS_00073452 | lncRNA | upstream | 123082 | 38292919 ~ 38296930 (+) | False | XLOC_037333 |
| TCONS_00073443 | lncRNA | upstream | 258805 | 38158600 ~ 38161207 (+) | False | XLOC_037329 |
| TCONS_00075178 | lncRNA | upstream | 395951 | 38021890 ~ 38024061 (+) | True | XLOC_037326 |
| TCONS_00073469 | lncRNA | downstream | 49005 | 38470041 ~ 38470807 (+) | False | XLOC_037341 |
| TCONS_00073476 | lncRNA | downstream | 194567 | 38615603 ~ 38618331 (+) | True | XLOC_037344 |
| TCONS_00074931 | lncRNA | downstream | 1442217 | 39863253 ~ 39865672 (+) | True | XLOC_037353 |
| TCONS_00073518 | lncRNA | downstream | 2659058 | 41080094 ~ 41083181 (+) | False | XLOC_037363 |
| TCONS_00073517 | lncRNA | downstream | 2659058 | 41080094 ~ 41083181 (+) | True | XLOC_037363 |
| TCONS_00073461 | mRNA | upstream | 872 | 38408991 ~ 38419140 (+) | False | XLOC_037337 |
| TCONS_00073459 | mRNA | upstream | 12836 | 38399912 ~ 38407176 (+) | False | XLOC_037336 |
| TCONS_00073460 | mRNA | upstream | 16541 | 38399915 ~ 38403471 (+) | True | XLOC_037336 |
| TCONS_00073457 | mRNA | upstream | 29022 | 38369872 ~ 38390990 (+) | False | XLOC_037335 |
| TCONS_00073458 | mRNA | upstream | 31148 | 38372216 ~ 38388864 (+) | True | XLOC_037335 |
| TCONS_00073465 | mRNA | downstream | 6536 | 38427572 ~ 38433916 (+) | True | XLOC_037339 |
| TCONS_00073466 | mRNA | downstream | 25468 | 38446504 ~ 38457413 (+) | True | XLOC_037340 |
| TCONS_00073467 | mRNA | downstream | 36770 | 38457806 ~ 38481481 (+) | False | XLOC_037341 |
| TCONS_00073468 | mRNA | downstream | 37157 | 38458193 ~ 38483789 (+) | False | XLOC_037341 |
| TCONS_00073470 | mRNA | downstream | 60744 | 38481780 ~ 38500391 (+) | True | XLOC_037341 |
| TCONS_00073453 | other | upstream | 108265 | 38292947 ~ 38311747 (+) | False | XLOC_037333 |
| TCONS_00073451 | other | upstream | 133224 | 38279383 ~ 38286788 (+) | True | XLOC_037332 |
| TCONS_00073445 | other | upstream | 258363 | 38158798 ~ 38161649 (+) | True | XLOC_037329 |
| TCONS_00073484 | other | downstream | 263835 | 38684871 ~ 38707510 (+) | False | XLOC_037347 |
| TCONS_00073487 | other | downstream | 316576 | 38737612 ~ 38744774 (+) | False | XLOC_037348 |
| TCONS_00073489 | other | downstream | 365892 | 38786928 ~ 38787044 (+) | True | XLOC_037349 |
| TCONS_00073497 | other | downstream | 589396 | 39010432 ~ 39011384 (+) | False | XLOC_037351 |
| TCONS_00073498 | other | downstream | 589409 | 39010445 ~ 39014598 (+) | False | XLOC_037351 |
