RNA id: TCONS_00073464


Basic Information

Item Value
RNA id TCONS_00073464
length 1818
RNA type mRNA
GC content 0.44
exon number 9
gene id XLOC_037338
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38420012 ~ 38425491 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCTTTCTAAGTCCATAatggctgtttgttttgctttgagcTCTGCAGAAAGGCTCGGATGGTGTTTTCTGAGACCCACGGCAGCGGCCACAGGCTTCAGGAGTGCAGCAGGAAATGCTGCGGCTGCTTCTGTCAGTGTCCAGGACGGCCACAGAAAGCTGAAGACTGAGGCTGACCTTCCAGAGATCAAAATCTTTACCATGTTGTATCAAATGCTCTTCAAAGGTTACCTCAACAGCGTACATGAGCTACAGTTATATCAAAAACAGGTTTATGGCCCCTTGTGGAAAATTAATGCTGGAAACCTCCAAGGCATTTCAATAAGCAGTGTGGAGCTGCTGGAAGAACTCCTTCGAAAAGATGAGAAATATCCATGCAGAGGATACATGACTCTGTGGACAGAGCACCGGGACTTAAGAGGCATTAGCTATGGCCCTTTCACAGAAGAAGGAGAGAAATGGTACAAACTGCGGGCGGTGCTGAACAAACGCATGCTTCATCCAAAGGACTCGGTTCAGTATGGAGATGTGGTGAATGCAGTGATCACAGACTTCATCAAACGCATTTACTATCTGCGGGAGATGAGTCCTACAGGGGATCTGGTGTCTAATCTGACCAATGAGCTTTACCGATTCTCTCTTGAAGGGATTGCGTCCATTCTCTTCGAGACGCGCATTGGCTGTCTGGAGAAAGAAATTCCTGCTGAGACACAaaagtttattaatttcattgctCAAATGTTCACCTACAGCATGCACGTGGCCCTTCTGCCCAACTGGACCCGCAAATATTTCCCATTCTGGCAGAAGTACATTGATGGCTGGGATGGCATATTCAAGTTCGGCACAAAAATGATTGACATGAAGATGGAGGCCATTCAGAAGCGTGTAGATACCAATCAGGATGTTGCTGGAGAGTATCTCACATACCTGCTTTCTAATGGCAAGATAAGCAGGAAAGACGTTTATGGAAGTGTATCTGAGCTGCTGCTGGCTGGAGTCGACTCAACCTCCAACACCATGTTGTGGGCTCTTTATCTTCTCTCAAAAGACCCAGAAGCTCAGGAGACTTTGTATCAGGAGGTAACCAAGGTCTTAAAGGATGACAGAATCCCAACAGCAGAAGAAGTGAACAGCATGCCTTTCCTCAAAGCTGTCATCAAGGAAACATTAAGACTGTATCCGGTGGTGCCTGTAAATTCCCGTCTTATTGCAGAAACTGAAGTCGTCATTGGTGAATACTTTTTTCCTAAAAAGACAACATTCACTTTGTGCCACTATGTAATCAGCCGTGATGAGAAAGTCTTCCCAGAACCACAGAAGTTCAAACCTGAGCGCTGGCTGCGAGACGGCAGAACCAGACCAAACCCGTTTGGGTCAATCCCATTTGGATTTGGAGTCAGAGCCTGTGTCGGTCGTCGCATTGCTGAACTGGAAATGCATCTGGCTTTGGCAAGGCTAATCAAGTTGTTTGAAATGCGACCAGACCCGACTGTAGGTGAAGTTAAGGCAAACTTTCGTTCAGTGCTTGTTCCCAACAAAAAGGTCAATCTGCACTTTGTGGAGAGACAGAAGACTGAAACATAGCTCAACTAGACATGAGCTGCATATGTACATAAGGAATTATCAGCTGAAGTGATTCATGTGAATTTGTCAATGGCTTTAACTGAATATGATTCTTCTTTTCTTTGTTAAAGACCCTGTACAAGAGTATGAAGAATATACTTTGTCACccaataatatttatttcattgtgATGATAGCCATGAAAATATTTTATAGATGTTAAAATCAATTAAACTTTATAATGAATTCAAAA

Function

GO:

id name namespace
GO:0008203 cholesterol metabolic process biological_process
GO:0036378 calcitriol biosynthetic process from calciol biological_process
GO:0009074 aromatic amino acid family catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0031073 cholesterol 26-hydroxylase activity molecular_function
GO:0020037 heme binding molecular_function
GO:0030343 vitamin D3 25-hydroxylase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-511 Predicted to enable cholesterol 26-hydroxylase activity and vitamin D3 25-hydroxylase activity. Predicted to be involved in calcitriol biosynthetic process from calciol and cholesterol metabolic process. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in cerebrotendinous xanthomatosis. Orthologous to human CYP27A1 (cytochrome P450 family 27 subfamily A member 1).

Ensembl:

ensembl_id ENSDART00000135748

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073462 lncRNA upstream 1917 38412748 ~ 38418111 (+) True XLOC_037337
TCONS_00073455 lncRNA upstream 111458 38307686 ~ 38308570 (+) True XLOC_037333
TCONS_00073452 lncRNA upstream 123098 38292919 ~ 38296930 (+) False XLOC_037333
TCONS_00073443 lncRNA upstream 258821 38158600 ~ 38161207 (+) False XLOC_037329
TCONS_00075178 lncRNA upstream 395967 38021890 ~ 38024061 (+) True XLOC_037326
TCONS_00073469 lncRNA downstream 44550 38470041 ~ 38470807 (+) False XLOC_037341
TCONS_00073476 lncRNA downstream 190112 38615603 ~ 38618331 (+) True XLOC_037344
TCONS_00074931 lncRNA downstream 1437762 39863253 ~ 39865672 (+) True XLOC_037353
TCONS_00073518 lncRNA downstream 2654603 41080094 ~ 41083181 (+) False XLOC_037363
TCONS_00073517 lncRNA downstream 2654603 41080094 ~ 41083181 (+) True XLOC_037363
TCONS_00073461 mRNA upstream 888 38408991 ~ 38419140 (+) False XLOC_037337
TCONS_00073459 mRNA upstream 12852 38399912 ~ 38407176 (+) False XLOC_037336
TCONS_00073460 mRNA upstream 16557 38399915 ~ 38403471 (+) True XLOC_037336
TCONS_00073457 mRNA upstream 29038 38369872 ~ 38390990 (+) False XLOC_037335
TCONS_00073458 mRNA upstream 31164 38372216 ~ 38388864 (+) True XLOC_037335
TCONS_00073465 mRNA downstream 2081 38427572 ~ 38433916 (+) True XLOC_037339
TCONS_00073466 mRNA downstream 21013 38446504 ~ 38457413 (+) True XLOC_037340
TCONS_00073467 mRNA downstream 32315 38457806 ~ 38481481 (+) False XLOC_037341
TCONS_00073468 mRNA downstream 32702 38458193 ~ 38483789 (+) False XLOC_037341
TCONS_00073470 mRNA downstream 56289 38481780 ~ 38500391 (+) True XLOC_037341
TCONS_00073453 other upstream 108281 38292947 ~ 38311747 (+) False XLOC_037333
TCONS_00073451 other upstream 133240 38279383 ~ 38286788 (+) True XLOC_037332
TCONS_00073445 other upstream 258379 38158798 ~ 38161649 (+) True XLOC_037329
TCONS_00073484 other downstream 259380 38684871 ~ 38707510 (+) False XLOC_037347
TCONS_00073487 other downstream 312121 38737612 ~ 38744774 (+) False XLOC_037348
TCONS_00073489 other downstream 361437 38786928 ~ 38787044 (+) True XLOC_037349
TCONS_00073497 other downstream 584941 39010432 ~ 39011384 (+) False XLOC_037351
TCONS_00073498 other downstream 584954 39010445 ~ 39014598 (+) False XLOC_037351

Expression Profile

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