RNA id: TCONS_00073465


Basic Information

Item Value
RNA id TCONS_00073465
length 1818
RNA type mRNA
GC content 0.44
exon number 9
gene id XLOC_037339
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38427572 ~ 38433916 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCGTTCTGTGTCCATAatggctgtttgttttgctttgagcTCTGCAGAAAGGCTCGGATTCGGTTTTCTGAGACCCACGGCAGCGGCCACAGGCTTCAGGAGAGCAGCAGGAAATGCTGCGGCTGCTTCTGTCAGTGTCCAGGACGGCCACAGAAAGCTGAAGACTGAGGCTGACCTTCCAGAGATCAAAATCTTTACCATGTTGTATCAAATGCTCTTCAAAGGGTACCTCAACAGCATACATGAGCTACAGATATATCAAAAACAGGTTTATGGCCCCTTGAGCAAAATCAATTCTGGAAACCTCCAAGGCATTTCAATAAGCAGTGTGGAGCTACTGGAAGAACTCCTTCGAAAAGATGAGAAATATCCATGCAGAGGATACATGACTCTGTGGACAGAGCACCGGGACTTAAGAGGCATTGGCTATGGCCCTTTCACagaAGAAGGAGAGAAATGGTACAAACTACGAGCGGTGCTGAACAAACGCATGCTTCATCCAAAGGACTCGCTTCAGTATGGAGATGTGGTGAATGCAGTGATCACAGACTTCATCAAACGCATTTACTATCTGCGGGAGATGAGTCCTACAGGGGATCTAGTCTCTAATCTGACCAATGAGCTTTACCGATTCTCCCTTGAAGGGATTGCGTCCATTCTCTTCGAGACGCGCATTGGCTGTCTGGAGAAAGAGATTCCTGTTGAGACTCAAGAGTTTATTAATTCAATTGCTCAAATGTTCACCTACAGCATGCACGTGGCCCTTCTGCCCAACTGGACCCGCAATTACTTCCCATTCTGGCAGAAGTACATTGATGGCTGGGATGGCATATTCAAGTTCGGCACAAAAATGATTGACATGAAGATGGAGGCCATTCAGAAGCGTGTAGATACCAATCAGGAGGTTGCTGGAGAGTATCTCACATACCTGCTTTCTAGTGGCAAGATGAGCAGCAAAGATGTTTATGGAAGTGTATCTGAGCTGCTGCTGGCTGGAGTCGACACAACCTCCAACACCATGTTGTGGGCTCTTTATCTTCTCTCAAAAGACCCAGCAGCTCAGGAGACTTTGTATCAGGAGGTAACCAAGGTCTTAAAGGATGACAGAATCCCAACAGCAGAAGAAGTGAACAGCATGCCTTTCCTCAAAGCCGTCATCAAGGAAACATTAAGACTGTATCCGGTGGTGCCTGTAAATTCCCGTCTTATTGCAGAAACCGAAGTCGTCATTGGTGAATACTTTTTTCCTAAAAAGacAACATTCAATCTGTGCCACTATGCAATCAGCCATGATGAGAAAGTCTTCCCAGAACCACAGAAGTTCAAACCTGAGCGCTGGCTGCGAGACGGCAGAACCAGACCAAACCCGTTTGGGTCAATCCCATTTGGATTTGGAGTCAGAGCCTGTGTCGGTCGTCGCATTGCTGAACTGGAAATGCATCTGGCTTTGGCAAGGCTAATCAAGTTGTTTGAAATGCGACCAGACCCGACTGTAGGTGAAGTTAAGGCAAACTTTCGTTCAGTGCTTGTTCCTAACAAAAAGGTCAATCTGCACTTTGTGGAGAGACAGAAGACTGAAACATAGCTCAACTAGACATGAGCTGCATATGTACATAAGGAATCATCAGCTGAAGTGATTCATGTGAATTTGTCAACGGCTTTAACTGAATATGATTCTTCTGTTCTTTGTTAAAGACCCTGTACAAGAGTATGAAGAATATACTTTGTCactcaataatatttattttattttgataatagccatgaaaatattttatatatgtaaaaatcaATTAAACTTTATAATGATTCAAAA

Function

GO: NA

KEGG:

id description
ko00120 Primary bile acid biosynthesis
ko03320 PPAR signaling pathway
ko04979 Cholesterol metabolism
ko00199 Cytochrome P450

Ensembl:

ensembl_id ENSDART00000108860

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073463 lncRNA upstream 6536 38420012 ~ 38421036 (+) False XLOC_037338
TCONS_00073462 lncRNA upstream 9461 38412748 ~ 38418111 (+) True XLOC_037337
TCONS_00073455 lncRNA upstream 119002 38307686 ~ 38308570 (+) True XLOC_037333
TCONS_00073452 lncRNA upstream 130642 38292919 ~ 38296930 (+) False XLOC_037333
TCONS_00073443 lncRNA upstream 266365 38158600 ~ 38161207 (+) False XLOC_037329
TCONS_00073469 lncRNA downstream 36125 38470041 ~ 38470807 (+) False XLOC_037341
TCONS_00073476 lncRNA downstream 181687 38615603 ~ 38618331 (+) True XLOC_037344
TCONS_00074931 lncRNA downstream 1429337 39863253 ~ 39865672 (+) True XLOC_037353
TCONS_00073518 lncRNA downstream 2646178 41080094 ~ 41083181 (+) False XLOC_037363
TCONS_00073517 lncRNA downstream 2646178 41080094 ~ 41083181 (+) True XLOC_037363
TCONS_00073464 mRNA upstream 2081 38420028 ~ 38425491 (+) True XLOC_037338
TCONS_00073461 mRNA upstream 8432 38408991 ~ 38419140 (+) False XLOC_037337
TCONS_00073459 mRNA upstream 20396 38399912 ~ 38407176 (+) False XLOC_037336
TCONS_00073460 mRNA upstream 24101 38399915 ~ 38403471 (+) True XLOC_037336
TCONS_00073457 mRNA upstream 36582 38369872 ~ 38390990 (+) False XLOC_037335
TCONS_00073466 mRNA downstream 12588 38446504 ~ 38457413 (+) True XLOC_037340
TCONS_00073467 mRNA downstream 23890 38457806 ~ 38481481 (+) False XLOC_037341
TCONS_00073468 mRNA downstream 24277 38458193 ~ 38483789 (+) False XLOC_037341
TCONS_00073470 mRNA downstream 47864 38481780 ~ 38500391 (+) True XLOC_037341
TCONS_00073471 mRNA downstream 68608 38502524 ~ 38516727 (+) False XLOC_037342
TCONS_00073453 other upstream 115825 38292947 ~ 38311747 (+) False XLOC_037333
TCONS_00073451 other upstream 140784 38279383 ~ 38286788 (+) True XLOC_037332
TCONS_00073445 other upstream 265923 38158798 ~ 38161649 (+) True XLOC_037329
TCONS_00073484 other downstream 250955 38684871 ~ 38707510 (+) False XLOC_037347
TCONS_00073487 other downstream 303696 38737612 ~ 38744774 (+) False XLOC_037348
TCONS_00073489 other downstream 353012 38786928 ~ 38787044 (+) True XLOC_037349
TCONS_00073497 other downstream 576516 39010432 ~ 39011384 (+) False XLOC_037351
TCONS_00073498 other downstream 576529 39010445 ~ 39014598 (+) False XLOC_037351

Expression Profile

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