RNA id: TCONS_00073466


Basic Information

Item Value
RNA id TCONS_00073466
length 1819
RNA type mRNA
GC content 0.44
exon number 9
gene id XLOC_037340
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38446504 ~ 38457413 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCGTTCTGTGTCCATAATGGCTGTTAGTTTTGCTTTGAGCTCTGCAGAAAGGCTCGGATGGTGTTTTCTGAGACCCACGACAGCGGCCACAGGCTTCAGGAGAGCAGCAGGAAATTCTGCGGCTGCTTCTGTCAGTGTCCAGGACGGCCACAGAAAGCTGAAGACTGAGGCTGACCTTCCAGAGATCAAAATCTTTACCATGTTGTATCAAATGCTCTTCAAAGGGTACCTCAACAGCGTACATGAGCTACAGTTATATCAAAAACAGGTTTATGGCCCCTTGTGGAAAATTAATGCTGGAAACCTCCAAGGAATTTCAATAACCAGTGTGGAGCTACTGGAAGAACTTCTTCGAAAAGATGAGAAATATCCATGCAGAGGATACATGACTCTGTGGACAGAGCATCGGGACTTAAGAGGCATTAGCTATGGCCCTTTCACAGAAGAAGGAGAGAAATGGTACAAACTGCGGGCGGTGCTGAACAAACGCATGCTGCATCCAAAGGACTCGCTTCAGTATGGAGATGTGGTGAATGCAGTGATCACAGACTTCATCAAACGCATTTACTATCTGCGGGAGATGAGTCCTACAGGGGATCTGGTCTCTAATCTGACCAATGAGCTTTACAGATTCTCCCTTGAAGGGATTGCGTCCATTCTCTTCGAGACGCGCATTGGCTGTCTGGAGAAAGAGATTCCTGCTGAGACACAAGAGTTTATTAATTCCATTGCTCAAATGTTCACCTACAACATGCACGTGGCCCTTCTGCCCAACTGGACCCGCAATTATTTGCCTTTCTGGCAGAAGTACATTGATGGCTGGGATGGCATATTTAAGTTCGGCACAAAAATGATTAACTTGAAGATGGAGGCCATTCAGACGCGTCTAGATACCAATCAGGAGGTTGCTGGAGAGTATCTCACATACCTGCTTTCTAGTGGCAAGATGAGCTGCAAAGATGTTTATGGAAGTGTATCTGAGGTGCTGCTGGCTGGAGTCGACACAACCTCCAACACCATGTTGTGGGCTCTTTATCTTCTCTCAAAAGACCCAGCAGCTCAGGAGACTTTGCATCAGGAGGTAACCAAGGTCTTAAAGGGTGACAGAATCCCAACAGCAGAAGAAGTGAACAGCATGCCTTTCCTCAAAGCCGTCATCAAGGAAACATTAAGACTGTATCCTGTGGTGCCTGTAAATTCCCGTCTTATTGCAGAAAGTGAAGTCATCATTGGTGAATACCTTTTTCCTAAAAAGACCACATTTAATCTGTTCCACTATGCAATCAGCCACGATGAAAAAGTCTTCCCAGAACCACAGAAGTTCAAACCTGAGCGCTGGCTGCGAGACGGCAGAACCAGACCAAACCCGTTTGGGTCAATCCCATTTGGATTTGGAGTCAGAGCCTGTGTCGGTCGTCGCATTGCTGAACTGGAAATGCATCTGGCTTTGGCAAGGCTAATCAAGTTGTTTGAAATGCGACCAGACCCGACTGTAGGTGAAGTTAAGGCAAACTTTCGTTCAGTGCTTGTTCCCAACAAAAAGGTCAATCTGCACTTTGTGGAGAGACAGAAGACTGAAACATAGCTCAACTAGACATGAGCTGCATATGTACATAAGGAATTATCAGCTGAAGTGATTCATGTGAATTTGTCAACGGCTTTAACTGAATATGATTCTTCTGTTCTTTGTTAAAGACCCTGTACAAGAGTATGAAGAATATACTTTGTCactcaataatatttatttcattctgATAATAGCCATGAAAATATTTTATAGATGTAAAAATCAATTAAACTTTATAATGAATTCAAAA

Function

GO:

id name namespace
GO:0008203 cholesterol metabolic process biological_process
GO:0036378 calcitriol biosynthetic process from calciol biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0031073 cholesterol 26-hydroxylase activity molecular_function
GO:0020037 heme binding molecular_function
GO:0030343 vitamin D3 25-hydroxylase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1060 Predicted to enable cholesterol 26-hydroxylase activity and vitamin D3 25-hydroxylase activity. Predicted to be involved in calcitriol biosynthetic process from calciol and cholesterol metabolic process. Predicted to be active in mitochondrion. Is expressed in liver. Human ortholog(s) of this gene implicated in cerebrotendinous xanthomatosis. Orthologous to human CYP27A1 (cytochrome P450 family 27 subfamily A member 1).

Ensembl:

ensembl_id ENSDART00000077479

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073463 lncRNA upstream 25468 38420012 ~ 38421036 (+) False XLOC_037338
TCONS_00073462 lncRNA upstream 28393 38412748 ~ 38418111 (+) True XLOC_037337
TCONS_00073455 lncRNA upstream 137934 38307686 ~ 38308570 (+) True XLOC_037333
TCONS_00073452 lncRNA upstream 149574 38292919 ~ 38296930 (+) False XLOC_037333
TCONS_00073443 lncRNA upstream 285297 38158600 ~ 38161207 (+) False XLOC_037329
TCONS_00073469 lncRNA downstream 12628 38470041 ~ 38470807 (+) False XLOC_037341
TCONS_00073476 lncRNA downstream 158190 38615603 ~ 38618331 (+) True XLOC_037344
TCONS_00074931 lncRNA downstream 1405840 39863253 ~ 39865672 (+) True XLOC_037353
TCONS_00073518 lncRNA downstream 2622681 41080094 ~ 41083181 (+) False XLOC_037363
TCONS_00073517 lncRNA downstream 2622681 41080094 ~ 41083181 (+) True XLOC_037363
TCONS_00073465 mRNA upstream 12588 38427572 ~ 38433916 (+) True XLOC_037339
TCONS_00073464 mRNA upstream 21013 38420028 ~ 38425491 (+) True XLOC_037338
TCONS_00073461 mRNA upstream 27364 38408991 ~ 38419140 (+) False XLOC_037337
TCONS_00073459 mRNA upstream 39328 38399912 ~ 38407176 (+) False XLOC_037336
TCONS_00073460 mRNA upstream 43033 38399915 ~ 38403471 (+) True XLOC_037336
TCONS_00073467 mRNA downstream 393 38457806 ~ 38481481 (+) False XLOC_037341
TCONS_00073468 mRNA downstream 780 38458193 ~ 38483789 (+) False XLOC_037341
TCONS_00073470 mRNA downstream 24367 38481780 ~ 38500391 (+) True XLOC_037341
TCONS_00073471 mRNA downstream 45111 38502524 ~ 38516727 (+) False XLOC_037342
TCONS_00073472 mRNA downstream 45820 38503233 ~ 38516727 (+) True XLOC_037342
TCONS_00073453 other upstream 134757 38292947 ~ 38311747 (+) False XLOC_037333
TCONS_00073451 other upstream 159716 38279383 ~ 38286788 (+) True XLOC_037332
TCONS_00073445 other upstream 284855 38158798 ~ 38161649 (+) True XLOC_037329
TCONS_00073484 other downstream 227458 38684871 ~ 38707510 (+) False XLOC_037347
TCONS_00073487 other downstream 280199 38737612 ~ 38744774 (+) False XLOC_037348
TCONS_00073489 other downstream 329515 38786928 ~ 38787044 (+) True XLOC_037349
TCONS_00073497 other downstream 553019 39010432 ~ 39011384 (+) False XLOC_037351
TCONS_00073498 other downstream 553032 39010445 ~ 39014598 (+) False XLOC_037351

Expression Profile

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