Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00073469 |
| length | 686 |
| lncRNA type | retained_intron |
| GC content | 0.47 |
| exon number | 2 |
| gene id | XLOC_037341 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 38457806 ~ 38500391 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006406 | mRNA export from nucleus | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0070390 | transcription export complex 2 | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040715-1 | Predicted to enable RNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to be part of transcription export complex 2. Predicted to be active in cytoplasm and nucleus. Orthologous to human MCM3AP (minichromosome maintenance complex component 3 associated protein). |
| ensembl_id | ENSDART00000141954 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00073463 | lncRNA | upstream | 49005 | 38420012 ~ 38421036 (+) | False | XLOC_037338 |
| TCONS_00073462 | lncRNA | upstream | 51930 | 38412748 ~ 38418111 (+) | True | XLOC_037337 |
| TCONS_00073455 | lncRNA | upstream | 161471 | 38307686 ~ 38308570 (+) | True | XLOC_037333 |
| TCONS_00073452 | lncRNA | upstream | 173111 | 38292919 ~ 38296930 (+) | False | XLOC_037333 |
| TCONS_00073443 | lncRNA | upstream | 308834 | 38158600 ~ 38161207 (+) | False | XLOC_037329 |
| TCONS_00073476 | lncRNA | downstream | 144796 | 38615603 ~ 38618331 (+) | True | XLOC_037344 |
| TCONS_00074931 | lncRNA | downstream | 1392446 | 39863253 ~ 39865672 (+) | True | XLOC_037353 |
| TCONS_00073518 | lncRNA | downstream | 2609287 | 41080094 ~ 41083181 (+) | False | XLOC_037363 |
| TCONS_00073517 | lncRNA | downstream | 2609287 | 41080094 ~ 41083181 (+) | True | XLOC_037363 |
| TCONS_00073527 | lncRNA | downstream | 2767434 | 41238241 ~ 41240872 (+) | False | XLOC_037366 |
| TCONS_00073466 | mRNA | upstream | 12628 | 38446504 ~ 38457413 (+) | True | XLOC_037340 |
| TCONS_00073465 | mRNA | upstream | 36125 | 38427572 ~ 38433916 (+) | True | XLOC_037339 |
| TCONS_00073464 | mRNA | upstream | 44550 | 38420028 ~ 38425491 (+) | True | XLOC_037338 |
| TCONS_00073461 | mRNA | upstream | 50901 | 38408991 ~ 38419140 (+) | False | XLOC_037337 |
| TCONS_00073459 | mRNA | upstream | 62865 | 38399912 ~ 38407176 (+) | False | XLOC_037336 |
| TCONS_00073470 | mRNA | downstream | 10973 | 38481780 ~ 38500391 (+) | True | XLOC_037341 |
| TCONS_00073471 | mRNA | downstream | 31717 | 38502524 ~ 38516727 (+) | False | XLOC_037342 |
| TCONS_00073472 | mRNA | downstream | 32426 | 38503233 ~ 38516727 (+) | True | XLOC_037342 |
| TCONS_00073473 | mRNA | downstream | 54074 | 38524881 ~ 38556328 (+) | True | XLOC_037343 |
| TCONS_00073474 | mRNA | downstream | 117274 | 38588081 ~ 38621202 (+) | False | XLOC_037344 |
| TCONS_00073453 | other | upstream | 158294 | 38292947 ~ 38311747 (+) | False | XLOC_037333 |
| TCONS_00073451 | other | upstream | 183253 | 38279383 ~ 38286788 (+) | True | XLOC_037332 |
| TCONS_00073445 | other | upstream | 308392 | 38158798 ~ 38161649 (+) | True | XLOC_037329 |
| TCONS_00073484 | other | downstream | 214064 | 38684871 ~ 38707510 (+) | False | XLOC_037347 |
| TCONS_00073487 | other | downstream | 266805 | 38737612 ~ 38744774 (+) | False | XLOC_037348 |
| TCONS_00073489 | other | downstream | 316121 | 38786928 ~ 38787044 (+) | True | XLOC_037349 |
| TCONS_00073497 | other | downstream | 539625 | 39010432 ~ 39011384 (+) | False | XLOC_037351 |
| TCONS_00073498 | other | downstream | 539638 | 39010445 ~ 39014598 (+) | False | XLOC_037351 |
