RNA id: XM_039793885.1


Basic Information

Item Value
RNA id XM_039793885.1
length 2174
RNA type mRNA
GC content 0.50
exon number 17
gene id tdp1
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1193040 ~ 1203082 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTAAGGAAAAGGAGTTTCGACCCGGACACGTGTTCCTTGTGCACCTCCTGCACTGTGGTTAACGTAGACCTACTATTTGAGTTAGTTTAGCGGTGGATTGATACGAGACTCTGACTTGGCATGACTCAGGACAGTCAACATGGCAAGTGGACCATCTCCAGCAGTGATGACGATGATGAGGATCTTCCTCTTTCTGGGACTACAACATCTAAGCCCCAGCGACCCGCTGTGTCCAGTCACAGCTCCCATCTGTCTGCCTCTGCTCCCAGCCCCAAACTGGAACCAGTAACAGCTACTGTGGAGGTGAAACCGGAACCAGCAAACACTCCTGTATCCTCACTCGTTATTGGCTCTGAGGCAAGACAGTTAGCAGCGACGAACCAGTTACATCCAGTGAAGTATGAAAGTAGTCCGTCATTGGCTGGAAAGCGGAAGAAAGAGGTGTCAGACGGCTCAGGCTGGGCTCTCTCAgatagtgatgatgatgatgatgatgatggagatGTGAAGGGGAAGAGCCTCAGTAACTTACCAAAGAGGGCGCCTCCGAGCCCTAAAACAAAGAAACCAAAGGTGGAGAAGGAGCGTCCTCCGAGTCCCCACGGCCGGCTCTACTACATCGATGAGCCAGAGGACTTCTTTGAGTCCAGTATTCCTTGTCTAAATGACCCCTACAGGTTTTACCTCAACAAAGTCACAGGCCTGGACAGGAAGTACAACAGTGGAGCTCTGCACATCAGAGACATTCTCTCTCCATTATTTGGGACCCTGAAAGAGTCTGCTCAGTTTAACTACTGCTTTGATATTGCCTGGATGGTTAAGCAGTTCCCATCAGAGTTTAGGGATCGTCCAGTTCTGATCGTCCATGGAGATAAGCGGGAGGCCAAGGCCCGGCTGGTTCAGCAGGCTCAGCCTTTTGCACATATTCGCTTCTGCCAGGCCAAGCTGGATATTGCTTTTGGAACTCACCACACGAAGATGATGTTGCTGTGGTATGAGGAAGGCTTCAGAGTCATTATTCTGACCTCCAACCTCATCAGAGCTGACTGGTACCAGAAAACACAAGGAATGTGGATGAGCCCCATGTTTCCACGGTTACCAAAGGGCAGCAGTGAGAGCGCAGGCGAGTCACCAACctttttcaagagagacctgCTGGAATACCTGGCAGCATACCGCGCACCAGAACTCGAGGAGTGGATCCAACGAATCAAAGAGCATGACCTGTCAGAGACCAGGGTTTATTTGGTCGGCTCAACCCCAGGCAGATATGTTGGCTCAGACATGGAGCGCTGGGGCCACCTGAGGCTGAGGAAGCTGTTGTACGACCACACAGACCCAGTTGCCGGGGAGGAAAAGTGGCCTGTGATTGGCCAGTTCTCCAGCATCGGCTCTATGGGACTGGATAAGACCAAATGGTTAAAAGGGGAATTTCAGCGCACAATGACCACGCTGGGGAAAGCCTCTCTTCGCTCAGACCCCCCCATGCACTTGGTGTATCCATCAGTGGAAGATGTGAGGACTAGTTTAGAAGGCTATCCAGCGGGAGGCTCTCTTCCCTACAGCATCCAGACAGCTCAGAAACAACTCTGGCTCCACTCCTTCTTCCAccgtTGGAAGGCAAATGTGACAGGAAGAAGTCATGCCATGCCCCACATCAAGACATACATGAGGACATCACCAGATTTCACTCAGCTCGCCTGGTTCCTCGtcacaagtgccaACCTGTCCAAAGCAGCATGGGGTGCACTGGAGAAGAACAACACTCAGGTGATGGTTCGTTCATACGAGCTGGGAGTCCTCTACGTGCCCGCCGCTTTTAACATGAAGACATTCCCTCTGCACAACAATCCGtttcctgcctcctcctcctctggttTCCCTGTGCCATTTGACCTCCCCCCCACATGCTACTCTTCTAaagATCAGCCTTGGATCTGGAACATTCCGTACAGCCAGGCTCCTGACACACACGGCAACATCTGGGTTCCCTcctaacaaaacacacacacacacacacacacacacactcacactgtacAGACCTCTCTATTACTATTGTCAGTAGTATATCTAGGTGTTAGTTGTcagtaacatttattttttatttttataccacACTGTAGACTCACATGTTTtctaacaataaataaaataatgttatcATTGTCTA

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33553 lncRNA downstream 18486 1171389 ~ 1174554 (-) True G24941
TU33554 lncRNA downstream 23281 1165662 ~ 1169759 (-) True G24942
TU33547 lncRNA downstream 41703 1151022 ~ 1151337 (-) True G24935
TU33546 lncRNA downstream 42083 1150228 ~ 1150957 (-) True G24934
TU33542 lncRNA downstream 59251 1133519 ~ 1133789 (-) True G24931
TU33572 lncRNA upstream 5476 1208558 ~ 1209459 (-) True G24954
TU33574 lncRNA upstream 13444 1216526 ~ 1216930 (-) True G24955
TU33596 lncRNA upstream 37685 1240767 ~ 1242703 (-) True G24974
TU33600 lncRNA upstream 49636 1252718 ~ 1254624 (-) True G24978
TU33609 lncRNA upstream 63604 1266686 ~ 1266960 (-) True G24987
XM_039795957.1 mRNA downstream 2154 1176462 ~ 1190886 (-) False LOC120556384
XM_039795956.1 mRNA downstream 2154 1176462 ~ 1190886 (-) False LOC120556384
XM_039795955.1 mRNA downstream 2154 1176462 ~ 1190886 (-) True LOC120556384
XM_039794047.1 mRNA downstream 113552 1061104 ~ 1079488 (-) False pnoca
XM_039794049.1 mRNA downstream 113560 1061104 ~ 1079480 (-) False pnoca
XM_039795079.1 mRNA upstream 207592 1410674 ~ 1457108 (-) True LOC120555898
XM_039794469.1 mRNA upstream 256082 1459164 ~ 1507908 (-) True LOC120555617
XM_039794471.1 mRNA upstream 256082 1459164 ~ 1507889 (-) False LOC120555617
XM_039794470.1 mRNA upstream 256082 1459164 ~ 1489349 (-) False LOC120555617
XM_039795403.1 mRNA upstream 308411 1511493 ~ 1555646 (-) True LOC120556048
TU33668 other upstream 228886 1431968 ~ 1457091 (-) False LOC120555898
TU33669 other upstream 228886 1431968 ~ 1456472 (-) False LOC120555898
XR_005638786.1 other upstream 385804 1588886 ~ 1642348 (-) False LOC120556047
unassigned_transcript_137 other upstream 630239 1833321 ~ 1833394 (-) True trnat-agu_3
TU33895 other upstream 1072393 2275475 ~ 2277091 (-) True G25228

Expression Profile