RNA id: XM_039793904.1


Basic Information

Item Value
RNA id XM_039793904.1
length 5793
RNA type mRNA
GC content 0.52
exon number 34
gene id eprs1
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1204494 ~ 1227658 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAAGTCCTAGCCCGTCTCTTCCATGGTCTCTTCACGCTGTGCTGCTAGCTTGGTGTGAAGAGCAGTCTTGGCTGTCCGCTTACTACAGCTGCTGTTGGGTTTCAGAAACAGTGAAAAGGTTTCACCACCTTTGTGGAAGAAGGATTTTTCACAGTATGGCGTTAAACCTCACCATCAACACAAGCAACCCGCCTCTAGGAGCGCTTCTGACAGCAGAGCATGTGAAGGACAGTGTGCAGGTATCAGTGGAGGAAGGCCAAGACACACGGCTTCACGTCTCAGAtGCAATCCAGTTCAGTGATGCCAACTCCATCAGTCGGTACTTGGCCCGGGTGGCTCCCGCTCTGGGCCTCTATGGAGCCAACCTGTTGGAGCAGActgagGTCGACCACTGGTTGGAGTTCAGTGCTCGGCATCTGTGTGGTCAGCCTGCTTTGAGCGTAGCTCTGGGTGACTTGGATAAGGCCCTTTCCCTGAGGACCTTCCTGGTTGGACATGCCCTCACCCTGGCTGACCTCTCTGTCTGGGCTGCCCTCAAAGGTCATAGGGAATGGCCAAGCCAGGGCAAATCCTTCTCCCATGTCAATCGCTGGTTCTCTTTCCTGAGCTCGCAGGTTCCCTTCACTGCTGTGGGCAACAAGTATGCCAGTAAGAATGCTCCAATAAGCAAATCCAATTCGGATGAGAAGAAGCAAGATGTTGGCAAGTTTGTGGAGTTGCCAGGAGCGGAGATGGGCAAGGTGGTGGTTCGATTCCCTCCTGAAGCCAGTGGATACCTGCATATCGGCCATGCCAAGGCTGCTCTGCTCAACCAGCACTACCAGATCACATTTAAAGGCAAGCTCATCATGCGCTTTGACGACACCAACCctgagaaggagaaggaggactTTGAGAAGGTGATCCTGGAAGATGTTTCCATGCTCCAGATCCATCCAGACCAGTTCACGTACACCAGCGACCATTTTGCCACCATAATGCGATTTGCTGAACAGCTGCTTGCCGAGGGCAAGGCCTACATCGACAACACGCCTCCTGAGCAGATgaagcaggagagagagcagcGCGTGGAGTCCAAATGCAGAAATAACACGGTGGAGCAGAACATGAAGATGTGGGCGGAGATGAAAGCTGGGACAGAGAGTGGTCAGACCTGCTGCATGAGGGCCAAGATTGACATGAACTCAAACAACGGCTGCATGAGAGACCCCACCCTCTACCGCTGCAAAAACACTCCACACCCTCGCACTGGAAACACCCACAAAGTCTACCCAACATACGACTTTGCCTGTCCCATTGTGGACAGTCTGGAGGGTGTGACCCATGCTCTCAGGACTACGGAGTACCATGATCGTGACGACCAGTTCTACTGGATCATTGAGGCTCTGGGCCTGAGGAAGCCCTACATCTGGGAGTACGCTCGACTCAACCTCAACAACACAGTGCTGTCCAAGAGGAAGCTCACCTGGTTTGTCGACCAGGGATACGTCGATGGATGGGATGACCCTCGCTTCCCCACTGTCAGAGGAGTCCTGAGGAGAGGAATGACTGTTGAGGGTCTGAAACAGTTCATAGCAGCCCAGGGTGGATCAAGGTCCGTGGTGAACATGGAGTGGGACAAGATCTGGGCCTTCAATAAGAAGgtTATTGACCCGGTGGCTCCCAGGTACACAGCTCTGTCCAGCTCTTATGTGGTTCCTGTCTCCGTCTCAGAGGCTACAGAGGAGATCAAGGAGGTGGCCAAACACCCTAAGAACACAGAGGTGGGCATGAAGAAGGTTTGGTATGGACCTCGAGTTCTGGTTGAAGGAGCTGATGCTGAGACCTTCTCAGAGGGAGAGATGGTCACCTTCATCAACTGGGGCAACCTCATCATCACCAAGATCAACAAAGGGGCAGATGCTAAGGTTCAGTCCATGGAGGCTCGTCTGAACCTGGAGAACAAGGACTACAAGAAGACGACAAAGATCACATGGCTGGCTGACACAAAGAGTGCCCCCCTGCTGCCCACCATCTGCATAAACTACCAGCCTCTCATCTCCAAAGCCGTCCTCACCAAAGACGACGACTTCAAGGAGTACATCAATAAAAACAGCAAGTCGGAGGAGAAGATGCTTGGAGATCCTTGTCTGAAGGACCTGAAGAAAGGTGACATCATCCAGCTCCAGAGGCGGGGCTTCTATGTCTGTGACCAGCCTTATGAGCCTGTCAGCCCTAACAGCTGTAAGGAGAGTCCCTGTGTCCTGTTCTACATTCCTGATGGACACACCAAGGAGATGCCCACTTCTGGATCCAAGGACAAGAGCAAGGCATCTAGCATCACACCTGCCACAACCTCTGCCAAGGCTGCCACAACCTCAGCCCCAGCCTCAGCACCTGCCTCGACCTCAGCCGGTGACTTATTCTCGAGCATTGTAGCACAAGGTGAAGCTGTCCGTCAGCTTAAGGTTGCCAAGGCTCCTAAAGACGAAGTGGACAAGGCCGTTCAGCAGCTGCTTTCTCTGAAGgCACAGTTTAAGCAGCAGACAGGTATGGACTACAAGCCTGGCATGGCTCCTCCCACCTCAGCTCCAGCCCCGCCCCCCACATCAACAGACTCCACCTCTTGTCCGTTCACCCGCGTTACCCAGCAGGGCGAGCTGGTTAGGAAACTAAAGTCAGAGAAGGCACCTAAGGACCAGGTTGACGCAGCAGTGAAACAGCTGCTGGCCCTGAAGGCGGAATATAAACAGGTCACAGGCCAGGAGTACAAACCTGGAGCAGCCCCAGTCCAGAAAGCCGCCGCCCCGGTCCAGAACAGCACCAGCCCTGCCCTTGCTGCCATTGTCCTCTATGAGAAGGTTGCTGAGCAGGGAGAAGTGGTCCGGAAACTGAAGGTTGAAAAGGCATCCAAGGATCAGGTAGATGCTGCAGTGAAGCAGCTGTTGGCTCTAAAGGCGGAGTATAAACAGCAGACCGGACAGGATTACAAACCAGGATTACAAGCCCCAGGTAGCCATGTACAGAGCCAGTCCAGCTCTTCCTCAACCCAGTCCAGCTCTCCCCCGCAGGCCCAGGAACTGTTCTCACAGGTGGCCCAACAGGGAGAGCTAGTGAGAAAGCTGAAGTCCGAGAAGGCCCCCAAGGAACAGGTGGATGAAGCCGTGAAGACTCTCCTGGACCTGAAGAACAAGTACAAGACGCTTACTGGACAGGATTACAAACCAGTGGCTGCTGCTGGAGCCACCGGAGGAGAGGACAAAAACCGCAAGGAGAGGGAGAACAAGTCTGAgaaacagggaggaggaggaccaggaggagggaagaaggcTAAAGGAGACAAAGCCAGCCAGGGCAAGGAATCCTCCGGAGGGGCAGGGGGCCCAGGGGATGGTCAAGGACCTAAGAAGCAAACACGGTTGGGCCTGGAGGCCAAGAAAGAGGAGAACCTGGCTGACTGGTACTCTCAGGTCATCACTAAGGCAGAGATGATTGAGTACTATGATGTTAGCGGCTGCTATGTGCTGCGGCCCTGGTCCTTTGCCATCTGGGAGGCCATTAAAGACTTCTTTGACCGGGAGATTAAAAAAATGGGTGTGGAGAACTGCTACTTCCCCATGTTCGTCTCTCAGGCCGCCCTGGAGAAGGAAAAAACCCACATTGAAGACTTTGCTCCAGAGGTTGCCTGGGTAACCCGGTCAGGAAAGACTGAGCTGGCAGAGCCCATCGCTGTCAGACCCACCAGTGAGACAGTGATGTACCCCGCCTACGCTAAATGGGTCCAGTCCCACAGAGACCTGCCGATCAAACTCAACCAGTGGTGTAATGTCGTGAGATGGGAGTTCAAACACCCCCAGCCCTTCCTGAGGACAAGAGAGTTCCTGTGGCAGGAGGGACATACAGCCTTTGCCAGCAAAGAGGAGGCAGCTGAGGAGgtGCTTCAGATTCTGGATCTGTACGCCAGGGTGTATGAAGAGCTGATGGCGATCCCTGTGGTGAAGGGGAGGAAGACGGAGAAGGAGAAGTTTGCAGGAGGAGATTACACCACTACTGTGGAGGCATTCATCTCTGCCAGTGGCCGAGCCATTCAGGGTGCTACATCTCACCATCTTGGTCAGAACTTCGCCAAGATGTTTGAGATCACGTTTGAGGATCCGAAGAGGCCGGGTGAGAAACAGCTGGCCTTCCAGAACTCCTGGGGTATCACAACCAGGACCATCGGCGTCCTCACCATGGTTCACGGAGACAACATGGGACTCGTACTGCCTCCCAGGGTAGCCTGTCTGCAGgTTGTCGTCATCCCATGTGGGATCACTGCCACCCTGCCAGAGCAGGAGAAGGAGGCAGTGTTGACCCAGTGCTCTAAATACATGAGCAGGCTGCTGGATGCTGGCATCAGGGTGAAGACTGACCTCCGAGACAACTATTCCCCAGGGTGGAAGTTCAACCACTGGGAACTCAAGGGAGTTCCTATCCGTCTAGAAGTGGGTCCTAAAGATATGAAGCAGAGTCAGTGTGTCGCAGTGAGGAGAGACTCAGGCGCAAAGTTGACAATTCCAGAGGCTGAGGTGGAGAAGAAGCTGGTCGCCATGTTGGAGGACATCCAGAACTCCCTGTTCAAGAAagcTTCAGATGACCTGAAGAGAAACATGGTCCCTGCAGACACGATGGAACAGTTCCAGAAAGAGTTGGACCAGGGCAAGATTGTCCAGATCCCATTCTGTGGAGGAATTGAGTGCGAGGATTGGATCAAGAAAATCACTGCCAAGGACCAGGACCTGGAGCCTGGAGCTCCGTCCATGGGAGCCAAGAGCCTCTGTATCCCCTTCTCACCCCTCAAGACGCTGCAGCCTGGTCAGATGTGTGTCAGCGGCAAGGAGCCTGCCCAGTACTACACCCTGTTTGGACGCAGCTACTAAACACCTGCTCTGCTGGAGCACCAGGATGGACATAGTAGTTGAAAGGGCTTTCCTATCTTCTCTCATCTATATGCTGTACCTGATCTCTTTTCAGTGTATAGGGTAACAGGGATATGAGGTGACTGGACTGTGGTATTTAGGATGggaatattttgtttgttttttaacatatGTTAACATTGTTATAATGCATCTGGAAGAAAGTGGAGGTGAGAGAAACTATTTACTTTTAGAATTCTGTTATGAGGAAAAACTGAGTGTTGTGCTGTTTCCCTCCTACATGGCTGATTACTCTCTAAAGACCATGTTAAAAGAACCCTCACTGTCCTGCAGTGGTTTGTATTGGAATGGGAAGAACCACCAGACACCAGGCAAATATTAAATCTTTCCTATCTTTTCagaattgatattttttttataactccCTACTTAACACCGTCAAGACAAATATTCAGATTTAGTTTGTTTTAAAGTATCTGTCAACATTTAATGGGGGATTGCACCTTTTTGAAATCTGGAAAATTGAAATACTGCTGAAAGAAATTCCTGAGAAACATACCATATACTACTGCTGTCTGGAGAAAAGTACTCTTTGCCTGCCAACAGTCCCATCTCTTGCAGCCAAACAGTCTCAGGAACTCTGCAGGTACTCAGGCTTGTTGCTGGGGTATTATTCTCACAGCTTTATCAGCCCTTCTCTCTACATATGACTGGTTACGGAGTGTGGCTCATCATACACAGCTTAATATAAACTTCTCCGATCACCCAAAGCCAAATGACGTAAAGCTGTGAGGAACTGTTTATGGTTAATAGTCAGCAATGTAGTCTTCTGTTACTGCTCTCCTGTTAAATAACTCTACAACTTGTCTATAATAAAGTAATTTCCATGGCAAA

Function

GO:

id name namespace
GO:0006424 glutamyl-tRNA aminoacylation biological_process
GO:0006433 prolyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004818 glutamate-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004827 proline-tRNA ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33533 lncRNA upstream 19267 1184725 ~ 1185227 (+) True G24926
TU33526 lncRNA upstream 26313 1175326 ~ 1178181 (+) True G24920
TU33522 lncRNA upstream 34799 1165649 ~ 1169695 (+) True G24918
TU33530 lncRNA upstream 69892 1134061 ~ 1134602 (+) True G24923
TU33490 lncRNA upstream 257434 946797 ~ 947060 (+) True G24890
TU33594 lncRNA downstream 25539 1253197 ~ 1254591 (+) True G24972
TU33606 lncRNA downstream 30861 1258519 ~ 1258816 (+) True G24984
TU33613 lncRNA downstream 75061 1302719 ~ 1302952 (+) True G24991
TU33637 lncRNA downstream 158390 1386048 ~ 1386264 (+) True G25011
TU33634 lncRNA downstream 185437 1413095 ~ 1415747 (+) True G25008
XM_039794248.1 mRNA upstream 41476 1103715 ~ 1163018 (+) True kif13ba
XM_039793907.1 mRNA downstream 759 1228417 ~ 1240457 (+) True glo1
XM_039793914.1 mRNA downstream 19227 1246885 ~ 1251901 (+) True LOC120555232
XM_039794041.1 mRNA downstream 35292 1262950 ~ 1269003 (+) True LOC120555381
XM_039794042.1 mRNA downstream 35292 1262950 ~ 1269003 (+) False LOC120555381
XM_039794192.1 mRNA downstream 81164 1308822 ~ 1311760 (+) True LOC120555491
TU33826 other downstream 611675 1839333 ~ 1842811 (+) True G25173
TU33868 other downstream 854300 2081958 ~ 2083319 (+) True G25204
TU34144 other downstream 2557275 3784933 ~ 3785542 (+) True G25431
TU34243 other downstream 3342715 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 4806551 6034209 ~ 6035193 (+) True G25708

Expression Profile