RNA id: XM_039793914.1


Basic Information

Item Value
RNA id XM_039793914.1
length 2132
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC120555232
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1246885 ~ 1251901 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctacttttgtgcaacaggccccagcTGGTCTTCTAggcgtcagctaatggggatcctttaTAATAAATCCAAATACAAATCCTCAGCTATTGCTTACCCTAAGATAGTGACCTACTGACTTTGTTTGGCTTGACACCTGATCCTGCTGCTCTGTCATAGTACTGTTCTCATGTTATATTAATGGAATTCCACCACCTCAATTATGAATTGCAATATGTTATTTCCATGGCCTAGGAAAGTTCAACCTCCGCAGTTTTGGGAACAGAGCATTCTCTagggcagctcccaggctctggaactccctcgcCCAAGAGGGACCTTGGGTCCCTCACCATATTCATCtcgacccatctcttcacctctgcctatcCCTAGCCCCACAACCCCCTCCCTTGTGcctgaatcttgttttgtttgtttgtctttattaTCTATATCTACCCTGTAAAGAGACTTTGAGTTCGTGAAAAGCTCTATATAAATTCAGTGTATTATTATTTGTGAACATGAgctactctctctctcaaagccaGAAACCAGAGTAAACCCAGTAAGGGCATCAAGACCTATTAAGTCCCTTTGGgatcagatagatagatagatagatacttacTTTATTTATGCTGAGGGCAATGTTATCTGTGGGATCTGGGGATTGGCTAATAAGGACTGATGATTGACACCTGGATGAACTGATTGCTCACGTGTCCAGAAATAGGAGTGCCTGGGCagtccctcttcctctctccctcctcaagGCTGCTTGGTTTGTTTGGACTTTGGGTTGAGTTACTTTTGCATTGTAGCATTGCTACTCCTACACACATCCATCCACTACACACATTACTGATAAACCGATAGCACGTTTAcctttgcttatttaaataaatttgatttAATAGAGCAAACGTGTTCTCCACATTTTGTCATGAGCCAGGTCATGACACTTGTGATGTCATCATGTAAGGTGACAGTGAAATTAAGACTCTTCCAGGCATCCAAGACTCAACGGCCAAATGAGCTTCATTTTATTGTAGTGTTCTCCGTTCTGAAACAGAACATGTACCCATATACTTAGAACATTCCCCTGCAGCTCTCAGTGCCATTTATAACATTTTCCCCAATTCATTGTCTATTTAGCACTTCCAGACTATACATCAGAAATTTGAGTTCTAGCGCTCTAGTTTTTGGATTTGGGAGAGAGTTGTTCGCGTTTACTAATATTTTTGGACTATGAATAGCATCTATGAATAGCATCCTTTCTGAAGACAACATGGAGAGAAACATCCCCAGGCTTCTCCTCATCCACCTCATCTTTGtcatcctctccactcctccGTGTGCAGCCACTACAGGCCTGAGCATCTTAAAGGTTGTCCCCATCTCCAATCCGTATAGCTGGGCTGTTGCTCAGAACTACTGCAGATGGCACCATAGTGACTTGATCACCATCAAAACCCAACAGGAGGCTGACAAGCTTGCCCCGTATGAAGGCTGGATTGGTCTGTATAGCGATACATCGTCACCGGAGTGGAAATGGTCCAGAGGAGATGAGAGAGCCACATTCTTCAACTGGGATTCAAATGAACCAGACCATAACCAGCACTGTGTTTTGATGCACAACTCAGCTCCAAAATGGAAAAGTGAAGATTGCTCTAGCAGTCAGCCCTTCTTGTGTGATGAAGGCCTGATTCTGGTCCAGGAGAATAAGACATGGGAAGAAGCCTTGGTGCACTGCACACAGCTGGAGGCTGCGGGCAGCACCACATGCCCGTACCAGCTTGCCATCCTGTCAGAACCAAACGACAATCTGATGGACACAGAGACAATAAGATTGAATGCAACCACTTCTGAGGTGTGGGTTGGACTGCGTTTCCtggctggtgattggctgtggATGAGCCCAAACACGAGCTCCGACCTTCCTCAATGTCCTGCAGAGCAGCAGCACTGCGGCGCCCTGGTTCCCGGTAACACCGAGTGGAAGATCATGAGCTGTAGTGAGAAAAGAAACTTCCTCTGCAGCAGAAGACCCACCAAATAACTGTATGTTTTTCCTCGATAAACGTTTGTGTTCTCTTAAAAGGATGTAAGAAATGATTTAATGTGGATTAAAGTGCTTTGAGTTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33533 lncRNA upstream 61658 1184725 ~ 1185227 (+) True G24926
TU33526 lncRNA upstream 68704 1175326 ~ 1178181 (+) True G24920
TU33522 lncRNA upstream 77190 1165649 ~ 1169695 (+) True G24918
TU33530 lncRNA upstream 112283 1134061 ~ 1134602 (+) True G24923
TU33490 lncRNA upstream 299825 946797 ~ 947060 (+) True G24890
TU33594 lncRNA downstream 1296 1253197 ~ 1254591 (+) True G24972
TU33606 lncRNA downstream 6618 1258519 ~ 1258816 (+) True G24984
TU33613 lncRNA downstream 50818 1302719 ~ 1302952 (+) True G24991
TU33637 lncRNA downstream 134147 1386048 ~ 1386264 (+) True G25011
TU33634 lncRNA downstream 161194 1413095 ~ 1415747 (+) True G25008
XM_039793907.1 mRNA upstream 6428 1228417 ~ 1240457 (+) True glo1
XM_039793897.1 mRNA upstream 19227 1204494 ~ 1227658 (+) True eprs1
XM_039793904.1 mRNA upstream 19227 1204494 ~ 1227658 (+) False eprs1
XM_039794255.1 mRNA upstream 83867 1103715 ~ 1163018 (+) False kif13ba
XM_039794041.1 mRNA downstream 11049 1262950 ~ 1269003 (+) True LOC120555381
XM_039794042.1 mRNA downstream 11049 1262950 ~ 1269003 (+) False LOC120555381
XM_039794192.1 mRNA downstream 56921 1308822 ~ 1311760 (+) True LOC120555491
XM_039795697.1 mRNA downstream 60547 1312448 ~ 1364726 (+) True LOC120556244
XM_039796055.1 mRNA downstream 126109 1378010 ~ 1385075 (+) True LOC120556440
TU33826 other downstream 587432 1839333 ~ 1842811 (+) True G25173
TU33868 other downstream 830057 2081958 ~ 2083319 (+) True G25204
TU34144 other downstream 2533032 3784933 ~ 3785542 (+) True G25431
TU34243 other downstream 3318472 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 4782308 6034209 ~ 6035193 (+) True G25708

Expression Profile