RNA id: TCONS_00073476


Basic Information

Item Value
RNA id TCONS_00073476
length 576
lncRNA type retained_intron
GC content 0.43
exon number 2
gene id XLOC_037344
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38588081 ~ 38621202 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAGCTGTTATAACAGTAAGGTTAATCTGAAATGTTCTAGAAACTCCCACAGGCTGATTAAGTTACTCACATGCAACTTTTTTCTAACACAAACCCCCATCTGGTTTTCTGAAAGTGATCAAACTGCAGGTCATCTACATTAGGTCTTCAGTTTAACAATTCCCGTAACATACAAAcatctttatttgtttaatggtcaatttttgtatattttgtgtgtgtgtgtactttgacAGGGCAGTGTGTAGGAAGCATGAACTGACTCAGTATGAACTGGAGACAGCCGTCCAGGATCTGAGCTCTAAGAAACAGCAGCGGGAGGAACTCGCCACCGGGACGGTCCGGACCTTCTCTCTGAAGGGAATGACCAGTAAACTGTTTGGACAAGAGACCCCAGAGCAGAGAGAGGCCAAGCTGAAAATGCTGGAGACACAGATTGAAGAAGGAGAGGAAATGGTCAAAGACAGAAATGTAGAATGCGAGTAAGCTCTGCACTATACTCTCAGCTGATTAAATAGGTTTTTGCAGACAGCAACAGAAGACATGATATCGCAGACCATGCTTTCTGTTGCTGTC

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04131 Membrane trafficking
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-030131-1923 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within protein transport. Is expressed in notochord. Orthologous to human SNX4 (sorting nexin 4).

Ensembl:

ensembl_id ENSDART00000132729

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073469 lncRNA upstream 144796 38470041 ~ 38470807 (+) False XLOC_037341
TCONS_00073463 lncRNA upstream 194567 38420012 ~ 38421036 (+) False XLOC_037338
TCONS_00073462 lncRNA upstream 197492 38412748 ~ 38418111 (+) True XLOC_037337
TCONS_00073455 lncRNA upstream 307033 38307686 ~ 38308570 (+) True XLOC_037333
TCONS_00073452 lncRNA upstream 318673 38292919 ~ 38296930 (+) False XLOC_037333
TCONS_00074931 lncRNA downstream 1244922 39863253 ~ 39865672 (+) True XLOC_037353
TCONS_00073518 lncRNA downstream 2461763 41080094 ~ 41083181 (+) False XLOC_037363
TCONS_00073517 lncRNA downstream 2461763 41080094 ~ 41083181 (+) True XLOC_037363
TCONS_00073527 lncRNA downstream 2619910 41238241 ~ 41240872 (+) False XLOC_037366
TCONS_00075179 lncRNA downstream 2619910 41238241 ~ 41246508 (+) False XLOC_037366
TCONS_00073473 mRNA upstream 59275 38524881 ~ 38556328 (+) True XLOC_037343
TCONS_00073471 mRNA upstream 98876 38502524 ~ 38516727 (+) False XLOC_037342
TCONS_00073472 mRNA upstream 98876 38503233 ~ 38516727 (+) True XLOC_037342
TCONS_00073470 mRNA upstream 115212 38481780 ~ 38500391 (+) True XLOC_037341
TCONS_00073468 mRNA upstream 131814 38458193 ~ 38483789 (+) False XLOC_037341
TCONS_00073477 mRNA downstream 6147 38624478 ~ 38641226 (+) False XLOC_037345
TCONS_00073478 mRNA downstream 6202 38624533 ~ 38640758 (+) False XLOC_037345
TCONS_00073479 mRNA downstream 11631 38629962 ~ 38641307 (+) True XLOC_037345
TCONS_00073480 mRNA downstream 26645 38644976 ~ 38667311 (+) False XLOC_037346
TCONS_00073481 mRNA downstream 26645 38644976 ~ 38682237 (+) False XLOC_037346
TCONS_00073453 other upstream 303856 38292947 ~ 38311747 (+) False XLOC_037333
TCONS_00073451 other upstream 328815 38279383 ~ 38286788 (+) True XLOC_037332
TCONS_00073445 other upstream 453954 38158798 ~ 38161649 (+) True XLOC_037329
TCONS_00073484 other downstream 66540 38684871 ~ 38707510 (+) False XLOC_037347
TCONS_00073487 other downstream 119281 38737612 ~ 38744774 (+) False XLOC_037348
TCONS_00073489 other downstream 168597 38786928 ~ 38787044 (+) True XLOC_037349
TCONS_00073497 other downstream 392101 39010432 ~ 39011384 (+) False XLOC_037351
TCONS_00073498 other downstream 392114 39010445 ~ 39014598 (+) False XLOC_037351

Expression Profile

//