RNA id: XM_039794031.1


Basic Information

Item Value
RNA id XM_039794031.1
length 1408
RNA type mRNA
GC content 0.46
exon number 10
gene id pir
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18910086 ~ 18925628 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTGACTTCCGCATTGTAGCTAGGCTACCTGTGGTGAAGAGGGATGCAGTCACAACAACAAACCATACGCTTGAGAATGAAAGTCATTCAGATATCGGTATAAAAACAGTCAAAACAACCAGATCAGTTTCGGGACTTGTTCTCTTATACTTTAAGGTAGTTTTTGCAGTTACTAGTGAATCCTTTCCCGGCACAATGATTGTGAGGAGGGTGGAAAAGACAGTTCTGAGTGTGGAACAGTCGGAGGGAGTCGGTGCTCGTGTCCGCAGGAGCATCGGTAGAAAAGAGCTAAGAAACCTGGATCCTTTCCTGATGTTGGATGAGTTCAGAGTGAGCAAGCCAGCAGGTTTTCCAGACCATCCTCACCGGGGATTTGAGACAGTTACATATGTTTTAGAAGGCATCACGGCCCATGAAGACTTCTGCGGCCATTCAGGACAACTGAAAGCTGGAGATCTGCAATGGATGACTGCAGGACAGGGGGTGGTCCATGCTGAGATGCCTGTGTCAGAGGAGCCCGTGGTGGGCTTACAGCTGTGGGTGAACCTGCCGAGACGAGACAAGATGGTGGAACCGGCGTACCAGGAGCTTAAAGGCTCAGAGATCCCCAAACCCAGCCAGGGAGGAGTTACAGTCGCTGTGATATCTGGAGAAGCTTTAGGagcaaagTCTAAAGTCTACACAAGGACACCGACCTTGTACCTGGACTTCAGACTGCAGACAGGCGCCCTGCATGTGCAGCCAGTCCCCTCAGGATGGACTACATTCATCTACACACTCTCAGGATCCATTCATGTTGGCCCAGATGAGGAGCAGCAGAAGGTGGAGCCTCATCACACTGTGGTGTTTGGAGATGGAGACTGCGTCAAAGTTAAAAACGAGGGCTCTGAAGTTTCCCATTTTGTGCTGATCGCTGGAAAACCAATCAAAGAGCCTGTGGTACAGCACGGTCCGTTTGTAATGACCACAGAGGAAGAGATTGGACAGGCTATCAGGGACTACCAGACTGGCAGAAATGGCTTTGAAAGGGCAAAAAACTGGAAATCAAAAATCAGCAACTCTTTCTAAACACTACGCCTTGGTAGAAATGTTAGCCTTACTTGTTTGCTGCTATAGAAGCATATttaaaaagatatttgttttgatgttttaaaaCATGGGTATTTTTCCCCTCATGAAATGTTCTGTACTTGTTTATCGCACATTAACTACTTTCCAGCACCTATTTTAACTTGTTACATGTCCCGTTGTTTGCCCAGTAGTAGTTAACCCTAGTAGTTCTacattgtaaaatatatattttagggAAAAAGTGTTTCTAACTGCTCTCCACTCCCCTTGTTAAATTTAAGCTTTATTACATTTTCCTTCTGCTGTTTGAAATAAAACAGTAGCAGAGCTGTTAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638784.1 lncRNA upstream 62680 18846269 ~ 18847406 (+) True LOC120556026
TU37505 lncRNA upstream 294277 18607305 ~ 18615809 (+) True G28195
TU37504 lncRNA upstream 300208 18607305 ~ 18609878 (+) False G28195
TU37466 lncRNA upstream 464790 18444816 ~ 18445296 (+) True G28163
XR_005638782.1 lncRNA upstream 728885 18004828 ~ 18181201 (+) True LOC120555993
TU37774 lncRNA downstream 128496 19054124 ~ 19055004 (+) True G28393
TU37775 lncRNA downstream 131918 19057546 ~ 19057853 (+) True G28394
TU37777 lncRNA downstream 146192 19071820 ~ 19072036 (+) True G28396
TU37770 lncRNA downstream 157579 19083207 ~ 19087001 (+) True LOC120555697
XR_005638744.1 lncRNA downstream 161567 19087195 ~ 19091823 (+) False LOC120555698
XM_039794245.1 mRNA upstream 809 18899447 ~ 18909277 (+) True zgc:113276
XM_039794247.1 mRNA upstream 809 18899447 ~ 18909277 (+) False zgc:113276
XM_039794246.1 mRNA upstream 809 18899448 ~ 18909277 (+) False zgc:113276
XM_039796077.1 mRNA upstream 20584 18875952 ~ 18889502 (+) True ace2
XM_039795647.1 mRNA upstream 112303 18770382 ~ 18797783 (+) True scml2
XM_039794188.1 mRNA downstream 410 18926038 ~ 18931134 (+) False vegfd
XM_039794187.1 mRNA downstream 419 18926047 ~ 18933824 (+) True vegfd
XM_039795225.1 mRNA downstream 33341 18958969 ~ 18969478 (+) True LOC120555985
XM_039795226.1 mRNA downstream 44958 18970586 ~ 18995278 (+) True LOC120555986
XM_039795228.1 mRNA downstream 44958 18970586 ~ 18995278 (+) False LOC120555986
TU37478 other upstream 341606 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 1167352 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3423665 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3463694 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 5672267 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 561618 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 572110 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 572465 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 586728 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 1785476 20711104 ~ 20761147 (+) True G28770

Expression Profile