RNA id: XM_039794037.1


Basic Information

Item Value
RNA id XM_039794037.1
length 565
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC120555377
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 28225624 ~ 28227538 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAATATCGTAAAACGAGATTTCACCGCTTGTAACGTAGACTTACGTATTTCCGGTCACAGTCATACTTCCTTTCAGACCATCGGCGGACGGGAGCAAGGAAGAGACAAATGCTGGCCACCAGAGCACTTCGACTTGTTGGCAAACGTGCCATTTCCACATCTGTCTGTGTACGTGGAGGACATGGTGTTGCGAAGGTAGAGGACTACACCCTCCCTGCCTACTTTGACAGGCGGGAGAATCCCCTCCCGGACATCAGCTATGTGCAGAACCTGAGTCCAGAGCAGGCGTCcctgaaggagaaggagaagggcTCCTGGGCTGCACTCTCTGATGAGGAAAAGATTGCATTGTACCGCATCAGCTTCAAACAGAGCTTTGCTGAGATGACCCAGGGATCGTCAGAGTGGAAGTCTGTGGTTGGAGGGATGTTTTTCTTAATTGGATTCACTGGCTTGGTTGTGCTCTGGCAGAGAAAGTATGGTATGTCTGCCAAAAAGTGTAATGGAAAGATTAGAAATTATGTGTCTGCAAATCTATTCAGGATTTGATGTAGTGATGCTTCT

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40708 lncRNA downstream 177 28225093 ~ 28225447 (-) True G30634
TU40658 lncRNA downstream 166456 28046759 ~ 28059168 (-) True dbndd1
TU40650 lncRNA downstream 187417 28037134 ~ 28038207 (-) True G30586
TU40635 lncRNA downstream 206549 28012058 ~ 28019075 (-) False G30579
TU40639 lncRNA downstream 213001 28011000 ~ 28012623 (-) True G30579
TU40721 lncRNA upstream 115162 28342700 ~ 28392518 (-) True G30644
TU40758 lncRNA upstream 220418 28447956 ~ 28550000 (-) True LOC120555801
TU40784 lncRNA upstream 441060 28668598 ~ 28668964 (-) True G30691
TU40860 lncRNA upstream 912816 29140354 ~ 29140638 (-) True G30759
TU40902 lncRNA upstream 990317 29217855 ~ 29237426 (-) False LOC120555471
XM_039795569.1 mRNA downstream 1418 28205726 ~ 28224206 (-) True dusp22a
XM_039796242.1 mRNA downstream 21746 28199110 ~ 28203878 (-) True irf8
XM_039795268.1 mRNA downstream 128477 28093058 ~ 28097147 (-) True foxf1
XM_039794314.1 mRNA downstream 152145 28049351 ~ 28073479 (-) False dbndd1
XM_039794313.1 mRNA downstream 152149 28049351 ~ 28073475 (-) False dbndd1
XM_039794039.1 mRNA upstream 11992 28239530 ~ 28420256 (-) False gse1
XM_039794038.1 mRNA upstream 11992 28239530 ~ 28420255 (-) True gse1
XM_039794885.1 mRNA upstream 223584 28451122 ~ 28453200 (-) False LOC120555801
XM_039794880.1 mRNA upstream 229862 28457400 ~ 28464778 (-) True atmin
XM_039794114.1 mRNA upstream 238487 28466025 ~ 28469643 (-) True cenpn
TU40633 other downstream 223154 28001640 ~ 28002470 (-) True G30577
unassigned_transcript_142 other downstream 345411 27880131 ~ 27880213 (-) True trnal-uaa_2
TU40500 other downstream 453814 27766831 ~ 27771810 (-) True G30465
TU40446 other downstream 592002 27626893 ~ 27633622 (-) True G30422
TU40273 other downstream 909466 27310171 ~ 27316158 (-) True G30319
TU40786 other upstream 441653 28669191 ~ 28669868 (-) True G30693
XR_005638770.1 other upstream 542463 28770001 ~ 28846965 (-) False mafa
XR_005638769.1 other upstream 542463 28770001 ~ 28846965 (-) True mafa
XR_005638771.1 other upstream 548437 28775975 ~ 28846965 (-) False mafa
TU40901 other upstream 1030440 29257978 ~ 29269164 (-) False LOC120555471

Expression Profile