RNA id: XM_039794041.1


Basic Information

Item Value
RNA id XM_039794041.1
length 3409
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC120555381
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1262950 ~ 1269003 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCGCGCCCACGGAGCGACGGACGCGCACACGGGAGCTTCTGAGAGCAAACTGCGTCTGGAAAAACTCGTGAAGGAACACTGAGATCAAACTGAGAGGGAAGACTGGAGACTACTCTAACTCAGTGCTGTATTCATCATAAGAAGTCCAGCAGCGAGGTGGCGCCGCGGCAGGGTCTGGCACTTCCTTAAAGAAGATTTCACTTATTTATCACTAAATAAGTATGTGGGACATACATCGCTCCACGGCAACACGGACATACGGTAAATCCTCCATGTAGCTGGACAAACGCTGACTACTTGGTGAGGGTCATAAAATGAACGCCTCGTGCTGGGATCCTGCAGTCATCATGTATCAGCAGAGCTCAGGGTTTGACCTCAATGCCAGCTGTGACTGGCTGACCCCTCACTGTAACTGGACATCAGTGGACAGAGCACTGCAGCTGCCTACCTTTTCTACAGCGGCCAAAGTCAGAGTGATCATTACCTTCATCCTGTGTGGCATTGCCACTTTCTGCAATTTGGCTGTGCTGTGGGCAGTCAATGGCCACAAGCGCCAGTCCCACGTCCGTGTGCTGATAATCAACCTGACTGCTGCCGATCTCTTGGTTACTTTCATTGTGATGCCTGTGGACGCAGTGTGGAACATCACAGTTCAGTGGCTGGCCGGTGACCTGGCCTGCAGATTTCTGATGTTCCTCAAGCTGCAGGCCATGTACTCCTGTGCCTTTGTCACAGTGGTGATTAGTCTGGACAGACAGTCGGCTATCCTCAACCCTCTGGCCATCAGCATGGCCCGTAAAAGAAACAGGGTCATGCTGATGGTGGCTTGGACTATGAGCGCCTTGTTCTCAATCCCTCAGATGTTCATTTTCCATAATGTGACCATCACATATCCAGCCAACTTTACTCAGTGCACAACTAGGGGGAGCTTTGTCACTCACTGGCAGGAAACAGCCTACAACATGTTCACCTTCTCCTGCCTCTTCCTGCTGCCGCTGGTCATAATGATTGTCTGCTACACCAGGATCTTCATCCAGATCTCCAAACGGATGACGAAAAAGAACTCGTCCTCAAACGAGCCACATCTCCGTTGCTCAAAGAACAACATCCCCAAAGCTAGAATGAGAACTCTGAAAATGAGCATCGTCATAGTGATCTGCTTCATCGTCTGCTGGACTCCATACTACCTGTTGGGTTTGTGGTACTGGTTCTTCCCAGACGACCTGGAGGGGAAAGTCTCCCACTCCCTCACCCACATCCTCTTCATCTGTGGGCTTTTCAATGCCTGCCTGGACCCAATCATCTATGGCCTGTTCACCATGCGCTTCCACAGGGGGCTAAGGAGCTGCTACCGCAACACAAGAGTGATGTCAGACCTGGAGACGAATAAAATGAAGTGTACTGCCACTGCTTTGCCCTATGAAAGGAGGATGGCTACTGGTGAAAAAGACAGCAACTGTGGACAGGCTGAGTCAAAATCTCCTCTGAAGGGAGATACCCTTGTTATTTCAGCGCTGAGTGTACAACATGATCAGAAAACAGAGCAGAACCAGGATCTTGACACTGCTAATAGAACTGGTTAAAACATTTCACCTTTTTCAGAGTTATCTGTAGCCTTGGAACCAGACAAATCTGCAAGCTCATGTCTCATCTGCTCTGGCAGATGAGCTTGGTCCTCCTGTCGGTCAGGCAGATTTCCAGCCAACCAGATCCTGGTTGGGCCAATCACAGCCGTTTGTTGAGACTGACAAGTTGCGGAGCCTTAGTGCTTTGTTTTTGGCTTGTGCACACTCGCCCAGGGAAATTACAGCGAGCGTAAACCGAGCTAAGTAAAGAGGAGCGTCGTTGAGGCATTTTCAAAAACACCcaagatggctgcagctgatgtgGAACTTTCTGTTGGCAAAAACGGCAACCCACGTTCACACACATGTTGATGCTACACTATCAGAGCTCATCTCTGCATGCTATAGTCTGTTTACATTTTTCGTtgcgctgattggttgtaggtccatCCAACTGGTCCAGAGGAAAATGAACTGAGAGGTTCCAGTCTAACTCGCATTTGCGATTTTGGTCTGGCGATGTCAGGCTAGGCTATCTGTATACTGGACATGTTTATTTCACAATCACACCTACCATGCATGTGTAGAATAAGTCTGAAAACATACAATATCCATCACCTagatgtgtctttgtgtctgtggtgCTCAAGGCTGCATCTTACTTGAGGCTTATATAACATCTTTTTGAACACACTAAATATGTTTGGAGCTGTTTGTtgctttgtgtgttgtgtaagtggcTCCTATTTTAAGACAAGTCTCCCATATACATTTACCAGGGTCAGGAAATGGCTTCAGGACTAAATGAAAAATAGAGGACAGTGATTGTCAGGTTACACAACAGTGCTGCCTATGTTGCATGTGGTTACGCACCACCTATATCAGattcagatacattttttattgtccTATACAGAGGGAATTTGCTTTCAGTCTGTACACATTTAATACTCAAAACTGGTAACATCCAAAAACAGAGCACAAGCAGACAAGCACATCACAACACACAAGTCTGTTACAGTGTGCCATTTAGGGCAGAAATGGTCTGTAAGGAAGCTTTTAAATGACTGTTGAGGTTACTGAGGTTGAGAGCTTTTATTTGCAGCCACAGTACCACAAAACAAGACTAGAAGTTTTACAGGTGCATTATCCTGTCCATTCCCTTAGCAAAAACAATGAACCACATGTAGGAAAATGTTACTAAGGATTTTAATCATGGCCCCAGTAattcatgacagtgtgacagtgagtcagcatgcacaatgacaggaccctgaaactgatgCAGCTTAATTGTTGTTTACTCCTGTGTTTTTCATACTGTGACATATTATTATCATTGATTAATCTGGCGATTATTTTATCCATGAATTGTTTGgtccataaaatgtcagaaattggTGAATAATACAGATCACAATTTCTAAgttgatgtttttaaattacatgTTTGGCCCGACCAAcagttcaaaatccaaatatattcaatttactgTCTCATAAGACAGGAAAGCAGCAGCTCCCCATAACTGAGACGCTGGAACTAGGTACTCTTTGGCTATTTTTGCTTCAAAAATTATGTAAGGATTAATTGGCAGTTAAAATAGTTGACGAAGGATTTTCTGTTGATCGGCTAATGGATCAATCGACTAACAGTTCAGCTCTAGCTGTTACAATCGGGTCCATCCTCCCTCAGAATCTTTCAAATGGCATATATATTTTGagtgtaataaacatttaagtGTTTTGGATACAGTGTAAACTGATGCCAGAGTATTTGTGTTGTTACAAATTGCAAATACATGATCATCAAATGTATCTAAATAAACTACAACAAAAATCA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0097211 cellular response to gonadotropin-releasing hormone biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004968 gonadotropin-releasing hormone receptor activity molecular_function

KEGG:

id description
K04280 GNRHR; gonadotropin-releasing hormone receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33606 lncRNA upstream 4134 1258519 ~ 1258816 (+) True G24984
TU33594 lncRNA upstream 8359 1253197 ~ 1254591 (+) True G24972
TU33533 lncRNA upstream 77723 1184725 ~ 1185227 (+) True G24926
TU33526 lncRNA upstream 84769 1175326 ~ 1178181 (+) True G24920
TU33522 lncRNA upstream 93255 1165649 ~ 1169695 (+) True G24918
TU33613 lncRNA downstream 33716 1302719 ~ 1302952 (+) True G24991
TU33637 lncRNA downstream 117045 1386048 ~ 1386264 (+) True G25011
TU33634 lncRNA downstream 144092 1413095 ~ 1415747 (+) True G25008
TU33792 lncRNA downstream 500279 1769282 ~ 1774440 (+) True G25144
TU33862 lncRNA downstream 913803 2182806 ~ 2183770 (+) True G25203
XM_039793914.1 mRNA upstream 11049 1246885 ~ 1251901 (+) True LOC120555232
XM_039793907.1 mRNA upstream 22493 1228417 ~ 1240457 (+) True glo1
XM_039793897.1 mRNA upstream 35292 1204494 ~ 1227658 (+) True eprs1
XM_039793904.1 mRNA upstream 35292 1204494 ~ 1227658 (+) False eprs1
XM_039794253.1 mRNA upstream 99932 1103715 ~ 1163018 (+) False kif13ba
XM_039794192.1 mRNA downstream 39819 1308822 ~ 1311760 (+) True LOC120555491
XM_039795697.1 mRNA downstream 43445 1312448 ~ 1364726 (+) True LOC120556244
XM_039796055.1 mRNA downstream 109007 1378010 ~ 1385075 (+) True LOC120556440
XM_039796056.1 mRNA downstream 109007 1378010 ~ 1385075 (+) False LOC120556440
XM_039795404.1 mRNA downstream 405738 1674741 ~ 1698359 (+) True zgc:165481
TU33826 other downstream 570330 1839333 ~ 1842811 (+) True G25173
TU33868 other downstream 812955 2081958 ~ 2083319 (+) True G25204
TU34144 other downstream 2515930 3784933 ~ 3785542 (+) True G25431
TU34243 other downstream 3301370 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 4765206 6034209 ~ 6035193 (+) True G25708

Expression Profile