RNA id: TCONS_00073480


Basic Information

Item Value
RNA id TCONS_00073480
length 796
RNA type mRNA
GC content 0.50
exon number 6
gene id XLOC_037346
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38644976 ~ 38682237 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGATCCAGCTACTGTAACCTTACCCAGGAGAGAGAATGAGTCCTCAAGTGCAAGAGTTATTTCATGAAGACGCACAGGGTTCCCAGATTAATGCTCAACCTTGGTGGAAGGTGCAGCTTTTTGTCTGGGAACCTGTGCTTTTCGGCACTTGGGATGGAGTCTTCACTACCTGCATGATCAACATCTTTGGAGTGGTGCTCTTCTTACGGACTGGCTGGCTTGTGGGTAACACGGGTGTGTTTTTGGGCATGCTGCTGGTATCATTGGTGGTGCTGGTGGCCTTGGTCACAGTGATGTCTGGTGTTGGCGTGAGTGAATGTTGCAGCGTGGGAAACGGGGGAGTTTACTCCATGATCTCCACTGTGCTGGGAGGCAGGATTGGAGGAACTGTGGGACTCCTGTATGTTTTTGGACAGTGTGTGGCTGGAGCGATGTACATTACAGGTTTTGCTGAGTCCATTGCTCAGGTGTTGAGTTTGCAGAGCACATGGGTTGTGAGGGGCATATCTGTGGCCGTTCTGCTCGGTCTGCTTGGAATTAATCTGGCCGGGGTCAAATGGATTGTACGACTTCAATTGGTTCTGCTTGGGATTTTAGCAATGTCAACTTTGGATTTCGTCATCGGAACTTTTAGTCATCTAGATCCAGAGCATGGATTCGTGGGCTATTCGGAGAAGCTGCTGCGTAAGAACACCCTGCCAGACTACACAGCTGGCGAGACTTTCTTCACCGTGTTTGGGGTTTTCTTTCCTGCGGCGACAGgtgtgatGGCGGGATTCAACATGAGCTCAGATC

Function

GO:

id name namespace
GO:0006884 cell volume homeostasis biological_process
GO:0055064 chloride ion homeostasis biological_process
GO:0055075 potassium ion homeostasis biological_process
GO:0055085 transmembrane transport biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0060271 cilium assembly biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015379 potassium molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-030131-5654 Predicted to enable potassium:chloride symporter activity. Acts upstream of or within cilium assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC12A8 (solute carrier family 12 member 8).

Ensembl:

ensembl_id ENSDART00000133849

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073476 lncRNA upstream 26645 38615603 ~ 38618331 (+) True XLOC_037344
TCONS_00073469 lncRNA upstream 174169 38470041 ~ 38470807 (+) False XLOC_037341
TCONS_00073463 lncRNA upstream 223940 38420012 ~ 38421036 (+) False XLOC_037338
TCONS_00073462 lncRNA upstream 226865 38412748 ~ 38418111 (+) True XLOC_037337
TCONS_00073455 lncRNA upstream 336406 38307686 ~ 38308570 (+) True XLOC_037333
TCONS_00074931 lncRNA downstream 1195942 39863253 ~ 39865672 (+) True XLOC_037353
TCONS_00073518 lncRNA downstream 2412783 41080094 ~ 41083181 (+) False XLOC_037363
TCONS_00073517 lncRNA downstream 2412783 41080094 ~ 41083181 (+) True XLOC_037363
TCONS_00073527 lncRNA downstream 2570930 41238241 ~ 41240872 (+) False XLOC_037366
TCONS_00075179 lncRNA downstream 2570930 41238241 ~ 41246508 (+) False XLOC_037366
TCONS_00073479 mRNA upstream 3669 38629962 ~ 38641307 (+) True XLOC_037345
TCONS_00073477 mRNA upstream 3750 38624478 ~ 38641226 (+) False XLOC_037345
TCONS_00073478 mRNA upstream 4218 38624533 ~ 38640758 (+) False XLOC_037345
TCONS_00073474 mRNA upstream 23774 38588081 ~ 38621202 (+) False XLOC_037344
TCONS_00073475 mRNA upstream 29129 38588088 ~ 38615847 (+) False XLOC_037344
TCONS_00073485 mRNA downstream 17560 38684871 ~ 38707510 (+) False XLOC_037347
TCONS_00073483 mRNA downstream 17560 38684871 ~ 38707510 (+) True XLOC_037347
TCONS_00073486 mRNA downstream 45163 38712474 ~ 38774403 (+) False XLOC_037348
TCONS_00073488 mRNA downstream 70613 38737924 ~ 38771727 (+) True XLOC_037348
TCONS_00073490 mRNA downstream 216077 38883388 ~ 38959196 (+) False XLOC_037350
TCONS_00073453 other upstream 333229 38292947 ~ 38311747 (+) False XLOC_037333
TCONS_00073451 other upstream 358188 38279383 ~ 38286788 (+) True XLOC_037332
TCONS_00073445 other upstream 483327 38158798 ~ 38161649 (+) True XLOC_037329
TCONS_00073484 other downstream 17560 38684871 ~ 38707510 (+) False XLOC_037347
TCONS_00073487 other downstream 70301 38737612 ~ 38744774 (+) False XLOC_037348
TCONS_00073489 other downstream 119617 38786928 ~ 38787044 (+) True XLOC_037349
TCONS_00073497 other downstream 343121 39010432 ~ 39011384 (+) False XLOC_037351
TCONS_00073498 other downstream 343134 39010445 ~ 39014598 (+) False XLOC_037351

Expression Profile

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