RNA id: XM_039794088.1


Basic Information

Item Value
RNA id XM_039794088.1
length 3394
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC120555410
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21699803 ~ 21709381 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCTGATGACTGAAATACTCCACACAGTCTCCGTCCTCAATACATGGATTTCGTCACACGAATGATTTTCTAGCCAATTACGCACAATGTGGAAAATCTCATGCAGGAGGAAGACTCGCAACTTCATGGGATTTCACTCAGGAATGTGTCCTCTGCGCGCACTTGGAGACATGCAGAGGCAACACGTTCTAGCCTGGTTCCACTCTGTTTTATGATACCGAGCCGCGGTGGACCTGCGATTTATTCCTGTGATGGGGAGAATCCCATGGAGCTGCGGCGCCGTGATCCTGCTGGCCATCATTAGCTCATGTCGTGCTGTCACTCTGGAGTCCGTCCACTGGAGCAGCTCCAATGCAAAATTTAGTCCAGGTCTGGGCCTGGTCCTGTATCCTCAGATCGGGGACAAGATGGACATTGTGTGTCCCCGGGCAGATGCTTCCACGGGGGGAAAGGAGGAGTTTTACCGAGTGTACCTGGTCTCCAGGAGTCAGATGGAGAGCTGCACCATCGACAAGACAGACACGCCCCTGCTGAACTGTGACAAGCCTCACCAGGACGTAAAGTTCACGTTCAAGTTCCAGGAGTTCAGCCCCAACCTGTGGGGTCTGGAGTTCCTCAAGGGGAGGGACTATTATATCACCTGCTCTCTGCAGGGTCTGGATAATACTAATGGAGGGGTGTGTAGAACCAAAGCCATGAAGCTGGTGCTCAGAGTCGGCCAAAGCTCTTCAGATCCACCTTCAACCCTCCAGGAGTCCCCCACCAGATTCCCACCCACACAACCAAAGTCTAAGTCCAAAGACCTCCCTGCGAAAGAACAggatataaaaaacaaaaccgACTCAGGCTCAGAAACAGGACAAACAAACCCCAGTGGCAGCGGTGGCTCTAAGCCAGGACTGTTCATGTGGGTTGTCTGTGGCGGTGTGATCCTCCTTCTGGTCATCATAATTCTGCTGGTCGTACTGTGGAGGCACCGTCCGCGTCGCTGTGTCCCAGACAGCCAGCAGTCGGCCTCCGTTTCCCTCAACACTTTGGCCGTGGCAAAGCGGGACAGCATCGGCAGCGACAACAATGGCTCGGACCGCAGCGATATTGTCTTTCCTCTGCGAGCTTCTGACAGCATGGCCTGCCGTCATTATGAGCGTGTGAGCAGCGACTACGGGCCCCCTGTGTACATAGTTCAGGAGATATCGCCCCAGAGTCCCACCAACATCTACTACAAAGTCTAATGTTTGCTGCTCTAATGCCTGTCTTTGGCTGATAATCCTAAACTAACACTTCCATTTCTTTAGTTTGCAGTGGGTGTGAAAAAAGGTCACATAAGTGATCATACATAGCCTGAGAGCTGTTGCACTGACAAATGCTGTTGAACCATTTTGTTGTCTTAATACTGTGAGAGGAACTTTATGTGTCATAATTGTGTTCAGTTTTTCTGGAAGTGGGCAGCAAATACCAGTGGTGGGATGtagctaagtacatttactcaagtagccTATTACTtatgtacaattttgaggtactttacttacCATTTCATGACATTTTACTTCCACTCCACTATATTGTGCTATTTACTCCACCACATTTATATGGCAGCCatactttgcagattaagattttgcacacaaaacaagtTTATGAAAGATGTTGCAACAGTATGCAACAGTAAGTACTTAAAATAAGCTCCACCTCAACCAACTATAAAATGATCAATCtaaaaacataatatataatagaaAAATAGCCTAACACTCAaaggagtacttttactttacaatGCAGTACATTTAgctaataatacatacatacacaacgtATGAAGAGCTTTTAAAATATGATTCATTGGAAGAAATTAATCTACCCAACAGTATAAAGAAATTGACGAAAGATTCAATTATTTGGTTAGTTTAAGTCAGTTAAAATGAATCTGACTGTTTGTTGAAGACatttttcatgaaaaaaacTGTCGACCATGACGTGGTTTCAGCTTCTCCAATGTGATgacttgctgcttttctttgtcttaaatgacagtaaactgaatcaTTTTGAGGATGGACGGACAAAATGAGACGTTTGAGGACGTCACTCAGAgttctgggaaattgtgatgcaTTCCTCACTATTTTCATGTGTTTTACAAACAATTAAAGGATTGAGCAAGAAAATAACCAGCAGATCTTAGatcagttgcagccctaaagaaTAGTTCAAAAATAGCTCCACCTCAAGTGTGTATTAATGCAACTTTTCTCTGCATTGagttcttttacttttgatacttcaagtacattttactgataaatacttacaaactttttacttaagtaacattttgaatccACACATTTTTAACTTTGATTTGTAATGGAGTATTGTTAAAGCtaattggtacttttacttgagtaagtgatgtaaatacttcctccaccacagGCAAGTACtggtttgtttatgtatttttttttttttaagaaaatgaatTTCTCACTGCCACTGCACATGGCAGCTTCAATTGTacagtaaatgtgtgttttatttaatttattgatACAGCTGAAAAAAAGGATTGATGATAACCTCCAACACACAAAATCTACTGTACATTTTTCACAACTGAATTGTTTAAACCTTTTTGAAATGCTGTTCAGTGAAATCAATCTTTCTATTCCATGCTGctttcattttaatattgtgtCACCTTCTGTTTAAACAGAATTATTACTAAACAGTGGTCAATATATAGCAAGGGGGccatgcttaaaaaaaaaaaatgtaattaggcTACTCAACATGGGAAATGTTTTGTAACTTGTGAAAGGTGTGAAAGTTTAAAAAACGGGACAACAACTTGTCAGTAGTCTCTTCATCCGTGTCTGTCTTCTCTTCCTGCTTTCCAAAACCAACAAGAGCAACAGTGAAAGTGATGGACACACAGGCTATGATATGATGAAGAAATGAGAGTTTGAATAAGAGTAGACTGCTGATAAATCACAGCTTTCCTTGTGGTTACAAAATGACTTGGCAGCACAACGCGTGCAATAGTAGCTGCACCACAATTTGCATACAGCTAGTGTTGAGACCCTTGTGGTCCCATTCAGCAATTACAGCCACTGTCTTATAGTCAAAGGACTTGTAGACATTTTCGTTGGTACATTAGCCGTGGTTGATGTGAAACTAACTTAAAACTCATATAACATAATTTTGGGTGGGTAGACGCTGCTCAGAGGAGCACGTCTCGTCCTTACTTAATGGTGCTCATGGGATAGTGACTGTCATTCTGCTGTGAACAGCACCATGATGAATTTTTCTCCATGTCTTATTAGGTtgaatggacaaaaaaaaatgaataatgcaaAAATACAGTTTGATTCAGTTTGTGTGAAAGTG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38378 lncRNA upstream 61722 21636531 ~ 21638081 (+) True G28880
TU38371 lncRNA upstream 83645 21615716 ~ 21616158 (+) True G28875
TU38368 lncRNA upstream 95897 21601596 ~ 21603906 (+) False dcun1d2b
TU38500 lncRNA downstream 9107 21718488 ~ 21718824 (+) True G28976
TU38502 lncRNA downstream 156910 21866291 ~ 21868095 (+) False gpc5a
TU38517 lncRNA downstream 177208 21886589 ~ 21888808 (+) False G28990
TU38519 lncRNA downstream 177301 21886682 ~ 21889549 (+) True G28990
TU38533 lncRNA downstream 374564 22083945 ~ 22084401 (+) True G29004
XM_039795433.1 mRNA upstream 18038 21674424 ~ 21681765 (+) True LOC120556067
XM_039795434.1 mRNA upstream 25504 21668518 ~ 21674299 (+) True mrpl16
XM_039794333.1 mRNA upstream 32086 21650745 ~ 21667717 (+) False tgfbrap1
XM_039795000.1 mRNA downstream 10653 21720034 ~ 21770452 (+) False gpc5a
XM_039794999.1 mRNA downstream 10654 21720035 ~ 21872025 (+) False gpc5a
XM_039794998.1 mRNA downstream 10654 21720035 ~ 21868186 (+) True gpc5a
XM_039795004.1 mRNA downstream 202025 21911406 ~ 21921876 (+) True LOC120555860
XM_039795358.1 mRNA downstream 480515 22189896 ~ 22227106 (+) False lmo7b
TU38307 other upstream 296353 21396213 ~ 21403450 (+) True G28826
TU38234 other upstream 938656 20711104 ~ 20761147 (+) True G28770
XR_005638835.1 other upstream 2179585 19512356 ~ 19520218 (+) False ercc3
XR_005638872.1 other upstream 2201579 19498093 ~ 19498224 (+) True LOC120556586
XR_005638873.1 other upstream 2201930 19497738 ~ 19497873 (+) True LOC120556587
unassigned_transcript_140 other downstream 837820 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38801 other downstream 1055338 22764719 ~ 22881652 (+) False ankrd11
TU38802 other downstream 1158339 22867720 ~ 22881366 (+) False ankrd11
TU38851 other downstream 1282756 22992137 ~ 22992502 (+) False LOC120555548
TU38916 other downstream 1427351 23136732 ~ 23137027 (+) True G29292

Expression Profile