RNA id: XM_039794095.1


Basic Information

Item Value
RNA id XM_039794095.1
length 2772
RNA type mRNA
GC content 0.51
exon number 18
gene id kcnq1.1
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 14101129 ~ 14153448 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGCATCACCTCAGCAACCCAGAGAGctgtaaagttaaattaaagaaaCGCCGTCCTGGTGATCTAGGGCATCACTAACTCAGTTGATTTGACATATTTATGCGCCCTGGTGAAATCAGGCGCAGAGCAGAAGGTAAGCGCACATGGGCGAACATTTGTCCGTTTGAGTCAGTGACCGAACATTTTACCACTGAGAAAAGTTAACCCATCGACAGAAGAATAACGGGGAAGCTGCAATGTCCAATTCCGCCCCCTATCAAGAGGGGAAGACACGGAGGTCTTCTGGTGTGGCACGTGGGAACAGACCACCGGATTTGGAGCTGTCGCAAACCACGTTTAGCGCGCCAGAACCGGGGACACCTGCGGGCAACGACGCGTTTTCTGAAAGAGACAAAATGCCAGAGGACGGTAACACTACCACAAATGTACCAACTGTTCACCTCCACCCGTACTTATCTCACCCCCGGATGTCTGTGCGGATGTCGGTGTACAGCACCGGGGTCCGTCCAATCCTCACCCGCGCCTACATCCAAGGACGCGTGTATAACTTTCTGGAAAGGCCGTCTGGCTGGAAATGCTTCGTGTATCACTtctcagtGTTTCTCATAGTTCTGGCCTGTCTGATCCTCAGTGTTCTGTCTACCATCGACCAGTACCAGGCCTTGGCTCACACAACACTCTTCTGGGTGGAGATCGTCCTTGTGGTGTTTTTCGGTGTGGAATATTTTGTCCGCCTCTGGTCAGCCGGCTGCCGCAGTAAATATGTTGGCATCTGTGGCCGACTACGCTTTGCTAGGAAGCCAATATCTATTATagATCTGATTGTAGTTGTTGCCTCAATAGTTGTGCTGTCAGTGGGCTCCAAAGGCCAGGTCTTTGCCACCTCTGCTGTAAGAGGGATTCGCTTCCTGCAGATCCTGCGAATGCTCCACGTGGACCGGCAGGGAGGAACCTGGCGTCTCCTCGGCTCCGTCGTCTTCATCCATCGGCAGGAGCTGATCACCACATTATACATTGGCTTTCTGAGCCTGATCTTCTCATCGTACTTTGTCTACCTGGCAGAGAAAGATGCAGTCGACAGCAGCGGCTCCTCAGAGTTTGGAAACTATGCTGATGCCCTGTGGTGGGGAGTGGTGACAGTGACTACCATTGGATATGGAGACAAAGTGCCACAAACCTGGATTGGAAAGACCATTGCATCCTGTTTCTCGGTCTTTGCCATTTCCTTCTTTGCTCTGCCTGCAGGAATCTTAGGCTCAGGCTTCGCCCTCAAGGTGCAGCAGaagcaaagacaaaaacacttCAACCGACAGATCCCTGCAGCTGCCTGTCTCATTCAGACATCATGGAGATGTTTTGCGGTGGAGAACTTTGATTCTGCCACATTCAAGAAGTTTTTGAGGAAGAGAACCAACATCCCCGCCTCCTCTCTGTCCACCCCCAAGCCCAAGAAATCGGTGAAGATAAGGAGGAAGTTGAAGAGCACTGACAAGGACAACAGTCCAGCGTCTCCCACAATCCCCAGCATCACCTACGACTCTGTATTTGACAGTGGGAGGGAGCTGAGTTCAGATGTTTACAGCACCGTGGGCACAGGATCCCACGCTTTGGGAGGATGTGATTGCCAGCAGTCCTGGACGTCTTTGTCTTCCCTTCAGTTCACCTCACCGCCTCCAGTGAAAAGAAACCCTGGCCTTTTGGACGTCCACTCTCCGGGCCCCCTGAAGAGGAACTGCAGCTTTGCCGACGACCTGGAGCTGGAGCCAGAGCGAGACAATGAGCTGGCTCCTATCACCTCACTGTCACAATTGACGGAGTCACATCGGAAAGCCATCCGGGTGATCCAGAGAATGCGTTATTTTGTGGCCAAGAGAAATTTCCAGcAAGCTCGTAAGCCGTATGATGTGCGCGACGTGATCGAGCAATACTCCCAGGGCCACCTCAACCTCATGGTGCGAATCAAGGAGCTGCAAAGAAGACTGGACCAATCTATAGGGAAGATAACTTTGTTCCAGTCGGGCTCCGACCGAGCGAAAGACAAAGGCACCAACTCCATCGGATCCAGACTCAACAGGATGGAGGACAAGATAACGCACATGGACCAGACGCTAAGCCGCATCGCAGAGTCCCTCGCCTCTGTGCTGAGCCAGAGGAACGTCGGTGAGGGCGAAGGTGGAGGCGGGCCGAGGCCACGGCCTGGACGCACCTTCAATGTCCTCCCCAGCCAGGACAGCCTGCCAAGCTACGACCAGCTGTCTTCATCACCTTCGCCCTTCTCGTCCAACATCACCAGCACCGCAGCCTGCCCCAACCCTCCCCACAGAAGCACCGCCAGTCAGGATGAGAGCAGCTGAAACCTGGAAACCAAACAGCCTCAAAGTGATTCTCTTTTTAGTAGAATGTATAACATGTCAAATGCAGTttttactctgtctgtctgtctgtcagtctgtctgtccgcCCACCTGCCCACTCGCTGGTCAAAATAGATTGAAATGATATCCTTTAAGAcctaattctgactttttttttgatctttttttattaaaatgattaCTGTTTAAAGGAATACTTCACCCTCAAAATGACCATTTGTATGTCGATTACTCACCGAGTGCTGCCTTGGATTCATgagactttgtttttgttgcattcCTCCACTGTGCAAGAATCCAAAAAAACGGAGAAAGGTCCTGATGTATTCTACtgaattatgtattattattttattatgtattcTATTGAATTATGTAtgcgtttaaaggtgcagta

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0001822 kidney development biological_process
GO:0097205 renal filtration biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36332 lncRNA downstream 96518 13997113 ~ 14004611 (-) True G27277
TU36334 lncRNA downstream 98382 14001850 ~ 14002747 (-) True G27279
TU36279 lncRNA downstream 347055 13753706 ~ 13754074 (-) True G27230
TU36260 lncRNA downstream 380533 13719198 ~ 13720596 (-) True G27211
TU36258 lncRNA downstream 388861 13708919 ~ 13712268 (-) True G27210
TU36357 lncRNA upstream 14109 14167557 ~ 14167758 (-) True G27295
TU36359 lncRNA upstream 16165 14169613 ~ 14169839 (-) True G27297
TU36363 lncRNA upstream 26679 14180127 ~ 14180348 (-) True G27301
TU36375 lncRNA upstream 70888 14224336 ~ 14225278 (-) True G27309
TU36389 lncRNA upstream 374394 14527842 ~ 14528127 (-) True G27322
XM_039794175.1 mRNA downstream 10669 14062036 ~ 14090460 (-) True trpm5
XM_039794845.1 mRNA downstream 52835 14017552 ~ 14048294 (-) False ttc17
XM_039794844.1 mRNA downstream 52836 14017552 ~ 14048293 (-) True ttc17
XM_039795130.1 mRNA downstream 105814 13967714 ~ 13995315 (-) True hsd17b12b
XM_039794112.1 mRNA upstream 72329 14225777 ~ 14250332 (-) True lingo1b
XM_039796120.1 mRNA upstream 424579 14578027 ~ 14580011 (-) True LOC120556476
XM_039796067.1 mRNA upstream 485538 14638986 ~ 14654184 (-) True muc15
XM_039795302.1 mRNA upstream 586744 14740192 ~ 14804767 (-) True madd
XM_039794711.1 mRNA upstream 657997 14811445 ~ 14828395 (-) False nr1h3
XR_005638877.1 other downstream 811865 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 1005363 13069996 ~ 13095766 (-) True G27075
TU35932 other downstream 1796305 12304539 ~ 12304824 (-) True G26924
TU35894 other downstream 2139357 11960701 ~ 11961772 (-) True G26891
TU35842 other downstream 2431860 11643571 ~ 11669269 (-) False LOC120555651
TU36388 other upstream 316310 14469758 ~ 14470345 (-) True G27321
TU36517 other upstream 689265 14842713 ~ 14843905 (-) True G27420
XR_005638870.1 other upstream 1486321 15639769 ~ 15639960 (-) True LOC120556584
TU37150 other upstream 3354675 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 3356502 17509950 ~ 17513168 (-) False G27925

Expression Profile