RNA id: XM_039794097.1


Basic Information

Item Value
RNA id XM_039794097.1
length 869
RNA type mRNA
GC content 0.49
exon number 2
gene id fadd
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6026435 ~ 6032154 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAGTATGTGAAGGAGATTAGCTGCCATAGCCTACTAACAGAGGCGGAAGTGAAAGTAAAACTCGAGTGTTTCCTAGTTCAGATCACATCGGCGTCTCAGTGGAGCCGCAAACATGAGCTCTTCCCAGTTTAACGCCGTTTTACTGAGTATATCTAACCAGCTGTCGGCTAAGGAGCTGGAGGATTTAAAGTTTCTGTGCATAGACATCATCGGCAAAAGGCAGCGGGATGATGTTAAGTCCGGAATCAAACTGTTCCAGCTCCTGATGGAGAGAGGCAAACTGGGAGCCGACAACACCAAGTGGCTGTCCGACTCCCTCACACACATTAATCGACAAGACCTCTCACACAAATTGAACAATTTTGAAAGCCAGTGTGAAATCACCGACGACCAACCGGACGACGACGAGAAAGCCAAACTGGACGTTGCCACAGAGGTGATCGCCGAGCATCTGGGAAGGTCTTGGCGTAAACTGGGCCGCCGACTGGGTTTGAATGACGTGAAGCTGGACTCCATCTCCAGGAGGCATCCCACAGATCTGGAGGAGACGACGCGGGAGCTGCTGAAGGAGTGGAGGAAGAGTCGAAGAGCCGAGGCCCGAACAGCGCAGCTGGTCGAAGCCCTGAGAGCCTGCCAGCTCAACCTGACCGCTGATAAAGTGGAGGACCGACTCGCGTCCCCCTGATACTGATGGAGACTTACAGATAGGACTAAGATACACTTTGGGAATGAAAATGAGAGTTGTGATTAACTTTCAAGGAAAGAAATGATCTATCAGAGAAATTTATACGCAGATGTATATACCGTTATCCACAAGAGAAATCATCTTCTGATCAATAAATCGACTTCCTGAATGTCATGAAACGTA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process

KEGG:

id description
K02373 FADD; FAS-associated death domain protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34435 lncRNA upstream 113982 5911229 ~ 5912453 (+) True G25675
TU34433 lncRNA upstream 133410 5892721 ~ 5893025 (+) True G25673
TU34421 lncRNA upstream 163568 5862659 ~ 5862867 (+) True G25663
TU34365 lncRNA upstream 350447 5674366 ~ 5675988 (+) True G25611
TU34339 lncRNA upstream 393405 5630664 ~ 5633030 (+) True G25593
TU34492 lncRNA downstream 3302 6035456 ~ 6035789 (+) True G25709
TU34494 lncRNA downstream 4705 6036859 ~ 6037969 (+) True G25710
TU34500 lncRNA downstream 246547 6278701 ~ 6280787 (+) True G25713
TU34614 lncRNA downstream 358445 6390599 ~ 6395706 (+) True rwdd3
TU34627 lncRNA downstream 395904 6428058 ~ 6428260 (+) True G25797
XM_039795087.1 mRNA upstream 5015 5917556 ~ 6021420 (+) False ano1a
XM_039795081.1 mRNA upstream 5015 5917573 ~ 6021420 (+) False ano1a
XM_039795080.1 mRNA upstream 5015 5918755 ~ 6021420 (+) True ano1a
XM_039795083.1 mRNA upstream 5015 5918755 ~ 6021420 (+) False ano1a
XM_039795082.1 mRNA upstream 5015 5918755 ~ 6021420 (+) False ano1a
XM_039794284.1 mRNA downstream 230256 6262410 ~ 6266708 (+) False LOC120555541
XM_039795724.1 mRNA downstream 262943 6295097 ~ 6311140 (+) True mtch2
XM_039796247.1 mRNA downstream 350416 6382570 ~ 6394804 (+) False rwdd3
XM_039796246.1 mRNA downstream 350417 6382571 ~ 6394802 (+) False rwdd3
XM_039794210.1 mRNA downstream 461783 6493937 ~ 6495721 (+) True LOC120555501
TU34243 other upstream 1450790 4570373 ~ 4575645 (+) True G25512
TU34144 other upstream 2240893 3784933 ~ 3785542 (+) True G25431
TU33868 other upstream 3943116 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 4183624 1839333 ~ 1842811 (+) True G25173
TU34491 other downstream 2055 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 19733 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 20661 6052815 ~ 6052897 (+) True trnal-uaa_1
TU34539 other downstream 232820 6264974 ~ 6266708 (+) True LOC120555541
TU34546 other downstream 254894 6287048 ~ 6288077 (+) True G25743

Expression Profile