RNA id: XM_039794113.1


Basic Information

Item Value
RNA id XM_039794113.1
length 2175
RNA type mRNA
GC content 0.49
exon number 2
gene id pou4f1
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19614845 ~ 19617452 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTAGACAGATAAGTGCGTCTGAGAGACTGCAGGCATCTCTGTGATCTCCGGGCTCAAGGCTGCACTCGGCGCACTACACAGCGAACTGCACTGCATCATTACTGGATAGGCAAAGGATCACTGTGTATCTATGACTATTTTCCTGCTCTTGTAGCAGTTTTCCCCCCTTCTTCCCGTGCACTTTAATTGGAGAAGCTCGCCAAGATGATGTCCATGAACAGCAAACAGCCGCACTTCGCAATGCATCCCTCTTTACCCGAGCACAAGTACACCACTTTGCATTCCAGCTCGGAAGCTATAAGGAGAGCCTGTCTACAAACTCCACAGCTACAGAATAACATATTTGCGAGCCTGGATGAGACCCTGCTGGCCCGGGCTGAGGCTTTGGCGGCCGTGGACATCGCCGTGTCCCAGGGCAAGACGCACCCGTTCAAGCCCGACGCCACCTACCACACGATGAGCACGGTGCCATGCTCGTCGACATCCACTGTGCCACTggcccaccaccaccatcaccaccaccaccaccaccatcagaACCTGGAGCCACAGGATATCATGGACCACATCACCTCGCCGTCCCTCGCCCTGATGTCCGGTGCGCACGACGGGTCCGGTGGAGGAGGCGGTGGCGGCGGAGGTGGCGGCGGAGGGCTCATCTCCACCTCCTCTGCCCACCCGCACTCTCACATGCACGGCTTGAGTCACCTCTCCCACCAGGCTATGAGCATGAACTCGCCTCTCACCCACCACGGGCTCTTACCGGGCCATCACGGGGGGAGCCAAGTCGGCCCAGGACTCACTAACACCGGACTCTCCTCCATCAATGACTCAGACACAGACCCAAGGGAGCTGGAGGCTTTCGCGGAGCGCTTCAAGCAGCGGAGGATCAAACTGGGGGTGACCCAGGCGGACGTGGGAGGCGCTCTGGCTAATCTCAAAATCCCCGGCGTGGGATCACTGAGCCAAAGTACAATTTGTCGATTCGAGTCGTTAACTCTCTCCCACAACAACATGATTGCGCTCAAACCTATCCTCCAGGCCTGGCTAGAGGAGGCCGAGGGGGCCCAGAGGGAGAAAATGAGCAAACCTGACATTTTCAACGGAGGGGAAAAGAAACGCAAGAGGACCTCGATAGCGGCCCCAGAAAAGAGGTCTTTGGAGGCTTACTTCGCCGTACAGCCTCGGCCGTCGTCCGAGAAAATAGCAGCTATAGCGGAAAAGTTGGACCTGAAAAAAAATGTGGTGCGAGTGTGGTTTTGTAACCAAAGACAGAAGCAGAAGAGGTTGAAATTTTCCGCTGCTCACTGATgggcaaagaaaagaaaaagaaaaaaaaaaagttgtgggACCGAATTTGGGGACCAAGAGACACTAAGACACCATTTTCAGTCTTTTGTCTCCAGCGATTTTACACGTTGGTGCACAATGGGCTTTAGATAGGCCTACCCATTTTATGAGGCTTCATATATCTTGTTTATTTTCACGTTATCGGTGAATGTGAAGTATGCAAATAACAGATTACACAAGTTTCGCTCAGTTGTTACGAGGGAAAAAGTTTAGCGACGTCGAAATTGCCTTTTAAAACATGTGGAGGGAGGTAATTTGCTTGATACTATAGCGAGTTATTTTCTCCTGATAGGCCTATTATTTGAAGTATAGCCATTTACGAATTACCTCATTGATTGTTGAACTGTGTTTCTGGTTTGATTTTTGTCGTTGTTGGTATAGAATATTTCATGAATCTGTTCATTTATTCATGTgttcatttcttcttcttttggagGCTGCTATAAACTCAAGTTTAGTTGCAAACGTTCATGGCTATAACGAAAACATTGTTTAGGCCTGCATGGAATCCTAATTCACGGGCGGCAATTTAGGCTGTCACATCTAGAGatatatttattttgaatttgcACAAAAGACCCTTTAGGTTTATAGATCGGTTGATGTcgaaatgttttttgtatataCAGACATCACTTTGTCACTTATCAGAGGTGAGCTCCAGTGTTTTGGAAGTCAATTATAGGCTCTATTGACACCATTGGCATCACGAGGAGGAGTTCCAAACAGATCCAGAGAGCACGAAATCCTTGTCTGCTTCATCAAGGAGATAGCACCAcggaaacaaaacaagttttcttTCATGTGTTTTAGTTTGCAgtgc

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09366 POU4F, BRN3; POU domain transcription factor, class 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38023 lncRNA upstream 103103 19511014 ~ 19511742 (+) True G28590
XR_005638725.1 lncRNA upstream 114622 19496214 ~ 19500223 (+) True LOC120555526
TU38015 lncRNA upstream 114625 19496238 ~ 19500220 (+) False LOC120555526
TU38014 lncRNA upstream 114691 19496238 ~ 19500154 (+) False LOC120555526
TU38012 lncRNA upstream 128320 19486270 ~ 19486525 (+) True G28580
XR_005638757.1 lncRNA downstream 353767 19971219 ~ 19972240 (+) True LOC120555794
TU38108 lncRNA downstream 354058 19971510 ~ 19972240 (+) False LOC120555794
TU38103 lncRNA downstream 375754 19993206 ~ 19993931 (+) False LOC120555792
TU38142 lncRNA downstream 496535 20113987 ~ 20114360 (+) True G28696
TU38170 lncRNA downstream 738620 20356072 ~ 20356354 (+) True G28721
XM_039795915.1 mRNA upstream 1120 19606123 ~ 19613725 (+) True obi1
XM_039795388.1 mRNA upstream 53120 19549354 ~ 19561725 (+) True rbm26
XM_039795387.1 mRNA upstream 53701 19549354 ~ 19561144 (+) False rbm26
XM_039796192.1 mRNA upstream 69189 19535697 ~ 19545656 (+) True LOC120556547
XM_039796202.1 mRNA upstream 81032 19528085 ~ 19533813 (+) True LOC120556555
XM_039794868.1 mRNA downstream 154667 19772119 ~ 19993954 (+) True LOC120555792
XM_039794870.1 mRNA downstream 154667 19772119 ~ 19993954 (+) False LOC120555792
XM_039794869.1 mRNA downstream 154667 19772119 ~ 19993954 (+) False LOC120555792
XM_039794871.1 mRNA downstream 154667 19772119 ~ 19960696 (+) False LOC120555792
XM_039794872.1 mRNA downstream 154667 19772119 ~ 19834400 (+) False LOC120555792
XR_005638835.1 other upstream 94627 19512356 ~ 19520218 (+) False ercc3
XR_005638872.1 other upstream 116621 19498093 ~ 19498224 (+) True LOC120556586
XR_005638873.1 other upstream 116972 19497738 ~ 19497873 (+) True LOC120556587
TU38013 other upstream 127312 19487246 ~ 19487533 (+) True G28581
TU37478 other upstream 1046365 18561895 ~ 18568480 (+) False LOC120556478
TU38234 other downstream 1093652 20711104 ~ 20761147 (+) True G28770
TU38307 other downstream 1778761 21396213 ~ 21403450 (+) True G28826
unassigned_transcript_140 other downstream 2929749 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38801 other downstream 3147267 22764719 ~ 22881652 (+) False ankrd11
TU38802 other downstream 3250268 22867720 ~ 22881366 (+) False ankrd11

Expression Profile