RNA id: TCONS_00073484



Basic Information


Item Value
RNA id TCONS_00073484
length 4462
RNA type nonsense_mediated_decay
GC content 0.47
exon number 12
gene id XLOC_037347
representative False

Chromosome Information


Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38684871 ~ 38707510 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CTCGCCGCCTGAAATAAAACCCTTCCAAGACTTCTTCACCAACTTTAAATCCATCCCAAGGAATTTACTAATGGGAAACTGTTAAAAGAGACCCACTTTCCGATGGTGACCCGGATCAGTTTGGCGTTTTATTTATTAGGAAGCCCGCCCGGTCGCCTTTATGATGGAAACGTGCGCTCGCCGTGTGCTTTTCACGGCCGCTCTGCTCGTCCTCAGTACTGTGATAGCGGAAACTTTCTCCACAGACTCGGACACCGATAATCCACTGAGTACAGAAACTTTTTATAGCCGAACAAGTGGCTTGAAACAAACCTCCTCCTGGCCAGGGAGAGAGGCCACTGCCACAGCCGTGGATCTATCGAGCGGACTGGGAGAGATGACGGAGATTCCCGCCAGTGTATCCATCACTGCAGCCCGAGAGGGACATTCACCAAAACCTTTACAAACCTCTACAAATGCAGCGGATTGGAAGACCAGTATGACCTCAGATGAGACAACAGAACATCTTCAATCTGACACTGAGCTTACCCATAATGCGACCGCCCAATGGGAGAGTCCATCATCAGCATCTCACAGCATTACCAGCCACCATCCAGTAACAGAGACACGAACCGTGCGAGATGTAACAGATCTGATAGACATGGACACCACAGACTCAGTCTCCCACACTGATAGCACCTACATTTCCACAACCAACCGAGTTGGAGAACGCACACTGCTCTCAGTGATCTCCAACAGCACCTTTGCGTACACCCAGAACTCAAGCATCTCTGATGCAGAGTCTCAAACGTCCCCATGGGAGGAGAAGACATCAGGAGCCACCCAAGTCAATGAGGAAACTGAAGAAACTGTGTCAACAGTGTCCGAACAGACTGATCCCACTTTTGAAGACCGCAATATCACCAGTGCAACTCTGGAGACTGGGCGGTCAACATTATTCCAAGGCACTGAGTCACAGACAGGACAACCTAGTGTCACAGGACAGACCGCTAAGGAGGTGACTGATATCGACAATCCAAATTCAACACCGCCTCTCACAGTAACCAGTAGGGATGTTGAGGAAACAGATGCCACATCAGTGAGCAGTGAGACATCTTATACACAAACCAGCAGTGACTCTGCCTCCTCAATCTTGCCTTTTACTTCTAGTGAACGCAATGTCACTAGCACGTCCCAAGAGAGCCATAATTCCACACTCATTTATTCCACAAATACTGGTGGTTCCACTGAGTTTTCGACTGGATCAGTGAGCTCTACCGCCCATGAAGAAACTGAACGGTCTTCAACTCAAATAGTAGATGAGACAACCCTTCATGATGTTACTTCTGCACCCCCAGTGCTTGAAGATGTAGCCACAACTATCGATGACTCGCTTTCCAAGTTCCCTTCCGGCCAATCGCCTACCATCCCTAAAACCGATGACCAAACCAACACACAAGTGGTGCCAACATCAACTCATAGGCCACAGGTTACAGATGAAGCCACCGATGAGGTGTCTACAGTTTACAGTTCTACCACTACTTTAACTACCACAACTCCTTCTGTCACCACTAGACAACTCCAACCACACCACACCACAGTGGAAACCCAAACACAACACACTACCATTGTTACCACCGATATCATTCAGGTACTGCGAACGACACCTTCTACAGCCCATCATGTGCCTACATCGACTACCAGTGGACCACAGGCTCCAAGTACAGCTGATTCTTCTGACGTCACCACATTGCACTTGGAAACCAGCACAGCCACGCCGGGGAACACTACGGCGcacggtggacgtgcaacaacgcCTTTTAGCAAGAGCAGCCCGAGTAGAACAACTGTGGTAGTGACCACTGGACATCTCACTGACAAAAGCACTACAGAGACAGGAAGCGCAACCACGCAGATGCCTCTTAGAACATCAGCATCACCAGGTCATGTATGTGGACCTAAAACCTGTGCAAATGGAGGTCATTGTGTTAGATCAGCTGAAGGAAGTTACTACTGTCAGTGTCTCTCCGCATGGACCGGACCCTTCTGCACTGAAGATGTGGACGAGTGTGTGAACAGTCCATGTCCTCAGGGTTCAGTGTGTGTCAACACAGGTGGTTCTTTCAGCTGTGAATGTGACCTGGGCTTTGACCTGGAGGATGGCCGCAGTTGTACACAAGTCAAGACATTTTTGGGCACTTTCACAGTCAACAACTCTCTTCATCTCAGAAATTTAGGTCTGCACGAGCTACACAGAGAGATCCAACAGCTGCTCAATGCTTCTCTCTCCATCTTCCATGGTTATAGACGCTTTACCCTGGGTAAAAGAGATGGACAAGGTGTGCAAATCCCAGTGGTGAGCATGTTTTCACTCTCCTCCAATGTGACCAGCGCGGATGTTTTCAACAGCATCCAGATGTCCCTTAACAACTGCAGCCGGACATACTCGCACTGTCCCATTAAACTTCAGCACCAGCTCTCCTATCACGTGGAGAGCCTGTGCATGGCCCAGAAGACCAAGTGTGATGTGCAGTACTCAGATTGCTCGGATATTAGCGGGATTCCCAACTGTCAGTGCCTTCCTGGGTACTTTAAAAGGAACCCAGAAGACATGACCTGCAGAGACTGTGGAGATGGACTCAAGCTTGTTAATGGCAAATGTGTCGAATGCATGTTTGGATTTGGAGGTTTCAACTGCAATAATTAAAAGACAAAAACGACATCAACAAGATCATCTTCAAAAGTGGAGAGCTTCAGATGTCGCCATACGCAGAGTTTCCTAAGAGCAATCGCGTGTCCATGGAGTGGGGTAGAGAGACTATCGAGATGCAGGAGAACGGCAGTACAAAAAACCTCCTGCAAATGACTGACATTTATTACTCGCCTGCACTGAGAAACTCCGACCTGGAGCGTAATGGTCTGTATCCATTCTCGGGCCTTCCTGGTTCAAGGCATTCCTGCATCTATCCGGCTCAGTGGAACCCTTCCTTCTTAAGCGACGATTCACGCCGAAGAGACTACTTTTGACAGCTTTACCCAGCAGGCATGCAATCTTGATGCTGCATGTAAGCTCTCTTGGCCTGTTGCAGATCCTGTAGCTCGATTCTGACCACTAAAGGCCTTTGAATGTGAAAATGAGCTGGCAGGAAAAGGCCATTATCTGTGAGACTGGATGAAAGCCGCAGAGCCCTGTCGGGGTCAATTTAGCATTCGGACAAAGTGCCACAAAAAGATTTTAGTATGGAGCTGATGAAGTGATGTTCTCCGCTCCCCACAGACCGCTTATTATTAAGCGCAAGTCAGCGAATTTAGACTAGACGGAGGAAGAATAACAACACAAGATGCCTGAGCTACAATCTAAATTTATATTATGAAAGTTTGCACTATGAACTTCTCACACAGATATTATTTCAAATGGAGAAAGCCATAAATGTATCATATTTATACTTGgaatgatttacccagctggtttGTACTGTGTTAAGGTTTTGTGAAGGACAAAATATCTGGATGTTTGTTTGAGTATGTGCATCAATAGCTGAAGAGATAATTTACCCCTagattttaattctgtcattatttactgtcGTACACGGatgtccaaactcaatcctggagtgCTGGTGTCCTGCAGGCTTTAGCTTCAACCGTAATTAGACATCTTAATCAGCTAACCAAGCTCTATCTaggccaggggtgctcaaccctgtacCTGGAGATAGGAATGGCTGACATGAAACTGACGTTTCAACACCGTGTCCAGATCccgaaacactgcactgaagcatgatccgaaacacccaggtctcactggaagtaCTAGGTCATCCGGAGaagtacttctcgcatactgattttcgaattctttgaattcggacatactactcagctcacatactgatttttgcGTATtgcatagtatggaagtatgcagttttggacgcagccacGATCTCTGCAAGTTAGTCAGGAACTCTCACCACTTCACTAAATGACTTGAAGCTTCAACTCTACAACGTGAGGTTTGATACCTCAATTTGGTTAACTTTTTCTTCGCTGAAGCTATTCCagagaaatacataaaaatgaccactaggtgtcactgtagagtggggtttctaaacgtttcgaagctttgaaacatttgctttgactgtttcagtgtttcatgaagcctcgctttgcccatcactacttggagatctaccttcttacagagttcagctccaaccctgatcaaacacacctgagccaattaattaggacctgaacagcactggataattacaggcaggtgactaggacacccctgatctaggcatactagaaacttccaggcaggtgtgttgaggcaagttagagctaaactatgcggGAGTTTGGGCACCTTTGCTCTAGTAATCCTTTGTTAGGAGTTGTTTGTTACAAAATGTTCAGCTCTTTGCTGTAAAATGGTTTAAGAATCAAGTTTTTAAAGCATAAA

Function


GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007275 multicellular organism development biological_process
GO:0007043 cell-cell junction assembly biological_process
GO:0005576 extracellular region cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040714-1 Predicted to enable calcium ion binding activity. Acts upstream of or within cell-cell junction assembly and heart development. Predicted to be located in cell junction; extracellular region; and plasma membrane. Predicted to be integral component of membrane. Is expressed in cardiovascular system; central nervous system; somite; and ventral mesoderm. Orthologous to human HEG1 (heart development protein with EGF like domains 1).

Ensembl:

ensembl_id ENSDART00000140325

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00073476 lncRNA upstream 66540 38615603 ~ 38618331 (+) True XLOC_037344
TCONS_00073469 lncRNA upstream 214064 38470041 ~ 38470807 (+) False XLOC_037341
TCONS_00073463 lncRNA upstream 263835 38420012 ~ 38421036 (+) False XLOC_037338
TCONS_00073462 lncRNA upstream 266760 38412748 ~ 38418111 (+) True XLOC_037337
TCONS_00073455 lncRNA upstream 376301 38307686 ~ 38308570 (+) True XLOC_037333
TCONS_00074931 lncRNA downstream 1155743 39863253 ~ 39865672 (+) True XLOC_037353
TCONS_00073518 lncRNA downstream 2372584 41080094 ~ 41083181 (+) False XLOC_037363
TCONS_00073517 lncRNA downstream 2372584 41080094 ~ 41083181 (+) True XLOC_037363
TCONS_00073527 lncRNA downstream 2530731 41238241 ~ 41240872 (+) False XLOC_037366
TCONS_00075179 lncRNA downstream 2530731 41238241 ~ 41246508 (+) False XLOC_037366
TCONS_00073481 mRNA upstream 2634 38644976 ~ 38682237 (+) False XLOC_037346
TCONS_00073480 mRNA upstream 17560 38644976 ~ 38667311 (+) False XLOC_037346
TCONS_00073482 mRNA upstream 37030 38645136 ~ 38647841 (+) True XLOC_037346
TCONS_00073479 mRNA upstream 43564 38629962 ~ 38641307 (+) True XLOC_037345
TCONS_00073477 mRNA upstream 43645 38624478 ~ 38641226 (+) False XLOC_037345
TCONS_00073486 mRNA downstream 4964 38712474 ~ 38774403 (+) False XLOC_037348
TCONS_00073488 mRNA downstream 30414 38737924 ~ 38771727 (+) True XLOC_037348
TCONS_00073490 mRNA downstream 175878 38883388 ~ 38959196 (+) False XLOC_037350
TCONS_00073491 mRNA downstream 180515 38888025 ~ 38967999 (+) False XLOC_037350
TCONS_00073492 mRNA downstream 254507 38962017 ~ 38993033 (+) False XLOC_037350
TCONS_00073453 other upstream 373124 38292947 ~ 38311747 (+) False XLOC_037333
TCONS_00073451 other upstream 398083 38279383 ~ 38286788 (+) True XLOC_037332
TCONS_00073445 other upstream 523222 38158798 ~ 38161649 (+) True XLOC_037329
TCONS_00073447 other upstream 523482 38161263 ~ 38161389 (+) True XLOC_037331
TCONS_00073446 other upstream 524299 38160446 ~ 38160572 (+) True XLOC_037330
TCONS_00073487 other downstream 30102 38737612 ~ 38744774 (+) False XLOC_037348
TCONS_00073489 other downstream 79418 38786928 ~ 38787044 (+) True XLOC_037349
TCONS_00073497 other downstream 302922 39010432 ~ 39011384 (+) False XLOC_037351
TCONS_00073498 other downstream 302935 39010445 ~ 39014598 (+) False XLOC_037351
TCONS_00073499 other downstream 303716 39011226 ~ 39013435 (+) True XLOC_037351

Expression Profile


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