RNA id: XM_039794153.1


Basic Information

Item Value
RNA id XM_039794153.1
length 2515
RNA type mRNA
GC content 0.50
exon number 13
gene id coro2ba
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 16495835 ~ 16544791 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTGTGGAGTGCATcatcagtAGctgccctcctctcctcctcatcactCTGCCACTCCTGCGGCGTTGCTCTCTGCTTGAAGGGGACACTGGCCTGCTCCTCACCCACTGATTCTGCATGACTGTCACAAAGATGTCATGGCGTCCGACCTACCGAAGCTCCAAGTTTCGAAATGTCTACGGAAAAGTGGGCAACCGGGAACACTGCTTCGACGGTGTCCCCATTACCAAGAACGTCCATGACAACCACTTCTGTGCCGTCAACTCCACATTCCTGGCAGTTGTCACCGAGAGTGCCGGCGGGGGCTCTTTCATTGTTATACCTGTTTCCCAGTGTGGCCGCCTGGACTCTCATTACCCAAAAGTGTGTGGCCACCAAGGCAATGTACTGGATATCAAGTGGAATCCCTTCTTTGAAAATATCATAGCATCCTGCTCTGAGGACACCTCGGTGCGAATATGGGAGATCCCAGAGGGCGGTTTGAGGCGCAACATGACGGAGGCGGTGCTGGAGCTGTACGGCCACAGCAGACGGGTGGGTGTGATCGAGTGGCACCCCACCAGCAGCGCCATCCTCTTCAGCGCTGGCTACGATTACAAGGTCCTGATCTGGAACCTGGAGATCGGAGAGCCGGTGAAGATGATCGACTGCCACACTGACGTCATTCTCAGCATGTCCTTCAACACAGACGGCAGCCTGCTGGCCACCAGCTGCAAAGACAAGAAGCTGCGTGTCATTGAGCCGCGCTCCGGGGCAGTCCTTCAGCAAGCCAGCTGTAAGAACCACCGTGTAAACCGAGTGGTGTTCCTGGGCAACATGAAGCGGCTGCTCACCACGGGGTTTTCACGCTGGAACACCCGGCAGATCGCTCTCTGGGACCAGGAGGATTTGTCCATGCCAATTATGGAGGAGGACATAGATGGCCTCTCAGGATTGTTGTTTCCCTTCTATGATGCTGACACACACATGTTGTACCTGGCAGGCAAGGGGGACGGCAACATCCGTTACTTTGAGATTACCACTGAGAAGCCGTTCTTACAATACCTAATGGAGTTCAGGTCCCCGGCCCCACAGAAAGGACTCGGTGTGATGCCAAAGCACGGGCTGGATGTGGGAGCTTGCGAGGTGTACCGCTTCTACAAGCTCGTCACCCTGAAGGGTTTGATCGAGCCCATTTCGATGATTGTGCCAAGAAGGTCAGACACATACCAAGAGGACCTCTACCCCATGACAGCAGGAACTGAACCTGCGCTGTCCGCCAGTGAATGGTTGAGCGGCATTAATAGAGACCCAGTCTTGATGTCCCTAAAGGAGGGTTACCAACGGCCAAACCAGTTAGTGTTCAAAGCCCCAGTGAAGGAAAAGAAGAGTGTAGTAGTGAATGGGATCGATCTGCTGGAGAACGTACCGCCCAGGACAGAGAACGAGCTCCTGCGGATGTTCTTCCGGCAGCAGGATGAATTGCGGCGGCTGAAGGAGGAGCTGACCACCAAGGACGTGCGGATACGCCAGCTGGAGCTGGAGCTCAACAACCTGAAGAACGTTAGCCCCAACAACGTCTGACCTCTCAGCCTCCTGGACTGGCAAAGCTGCTTCCTTTGCCCCCAATTGTGACCTCCAACAAGCTTCTGAGCCCTCCTACGCCTCTTTTTTGATATATCATAACTTCACCCCTGCTGCCCTGCATAGTGCACACAATAATATGATAGGTGTTGGATAATCTCTTTACTGGCGCAATTACAGAAATATTGTAATAATTACAAATATGATAAGTAATGGAGACAAGGCAGTGTTCATAGATTTCTACGTTAACATGAAATCAATCATAGGGAAGGTTTGAGATCCAATCCATTTAGGTATTATCTGTTTTTACAACGTATATCTAGCACACCTTAAGCGTTACGATGAGTAATTGCATATTTCCTGCCAGACCTCCTGAGTGTTTGTCTCACTGTGCCTACCCTATCATTCACTTTGCAATACCTTGATCACCACGCAAAAAAAAGCCCCCTACACTCATCCCCCTACCACCATCTAATTCTCATGTTCTGCTAAGGCAAAACTGGAGGTTAAAAAGACTGTCACTGGCTCCTATGTTCCTTCCCCAAGGCCTTACACCCTGCTGCAGACACAGTTTGCAGTGAGCTGCAACATCATCTCAAAATGGCTGACATGTGAAGTACTTGACAGATGAGACGAGCAGACAGggatcacgtttttttttttcacacagctGCTAATCCCGTAGCTTCTTTACTCACCTTCAGATGGTGCTGGCTATAGATTGACTTCACAATACTGACATATACAGTAGCTACCCAAAATGCAGTCTTTTCTTCCCAAGGATAGTGGGTAGTCCACTCactttaagtgttttattctttatttaaataGTGGGAAAGCAGCAGGGGAGACATGGATCCAGAGGTGGTGGACTTGCGTTACTCAAATATGGTCTCAAGGGAAGCTTTGCTGgctgttattattttttagggCTAATTTTATGGATGTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36892 lncRNA upstream 90186 16405528 ~ 16405729 (+) True G27711
TU36891 lncRNA upstream 111666 16383992 ~ 16384249 (+) True G27710
TU36890 lncRNA upstream 121573 16374113 ~ 16374342 (+) True G27709
TU36889 lncRNA upstream 143930 16351784 ~ 16351985 (+) True G27708
TU36887 lncRNA upstream 157143 16338387 ~ 16338772 (+) True G27706
XR_005638864.1 lncRNA downstream 127811 16672602 ~ 16681805 (+) False LOC120556470
TU36934 lncRNA downstream 127823 16672614 ~ 16681853 (+) True LOC120556470
XR_005638865.1 lncRNA downstream 154180 16698971 ~ 16700822 (+) True LOC120556471
XR_005638866.1 lncRNA downstream 154180 16698971 ~ 16700822 (+) False LOC120556471
XR_005638827.1 lncRNA downstream 185773 16730564 ~ 16807781 (+) True LOC120556216
XM_039795542.1 mRNA upstream 83344 16411033 ~ 16412571 (+) True LOC120556141
XM_039794736.1 mRNA upstream 174969 16312723 ~ 16320946 (+) True calml4a
XM_039794735.1 mRNA upstream 183236 16301781 ~ 16312679 (+) True cln6a
XM_039794734.1 mRNA upstream 183236 16301782 ~ 16312679 (+) False cln6a
XM_039796263.1 mRNA upstream 474272 16019150 ~ 16021643 (+) False senp8
XM_039795179.1 mRNA downstream 36594 16581385 ~ 16642847 (+) True glceb
XM_039795178.1 mRNA downstream 36594 16581385 ~ 16642847 (+) False glceb
XM_039795181.1 mRNA downstream 36594 16581385 ~ 16632357 (+) False glceb
XM_039795180.1 mRNA downstream 61342 16606133 ~ 16642847 (+) False glceb
XM_039795182.1 mRNA downstream 107026 16651817 ~ 16662729 (+) True paqr5b
TU36678 other upstream 1009494 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 1049523 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 3258096 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 3385576 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 4464187 12031621 ~ 12031728 (+) True LOC120556595
XR_005638756.1 other downstream 1179757 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 2017104 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 2942455 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 2952947 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 2953302 19498093 ~ 19498224 (+) True LOC120556586

Expression Profile