RNA id: TCONS_00073487


Basic Information

Item Value
RNA id TCONS_00073487
length 851
RNA type nonsense_mediated_decay
GC content 0.49
exon number 4
gene id XLOC_037348
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38712474 ~ 38774403 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTTAAACCATACACGGGTTGGTGCTATGGGGGAAATGGAGGAAGGGTTGATGATTCAGTCATTGTGGCATCTCTCCCAGCATGTTTCATTGGCGAATCGAGCCGGTCGTTTACAACAGAGGGTGTTGGCAGTGCTTGGTGAACATGCTTCTAGGCACTACAGCCAACAACTGGATGGTTTGAAGAAGAAACTTCTTGAAGCACGCTGCTCCCCCAAATTCTCAATGACATCAGACCCTCTTTTTGAGACTGCAAAGATAGATCAGGCTCTCAGAAGAAACTTCCAGTTCACTCAAACACATAAGCAACCTCTGAAACTTAGAGATGTGCAGAATGTAGCTCACAGTGGTCATGCTGTTCTGCAAGGACTGCTGGAGTCTCTGGACTCAGATGCCACAGCTAGCAGCTCAGATGAGGAGGGGGACCATGAAGACACAAACGCGACCTCAGACCTCCCAAATTGTGATGTTTGTGAGGTGAGATGGCTGAAGGACAGAGCTGAACTCTGCAGTCGCTGGACATGGATGCAGATGAGACAGTCTGAGTTGGACTCTCAGATTCAGAGGATTGAAAAACTCCATCTACAGATCCTCGCTAAAAAGTCGTGTGGTTTTGGCTGAGTGCCAGCCTCTGACGGACCAACAGATCCAACACACCTTGTGGACAGAGACCATGGATCTGTCATTTACAGCTGGGAACATGCAAGATTTGCACTCTGATCTAGAAATGGAACCTAGCAGCCCCACACGCCTTCTGAGGAACATCGAGAGACAGAGTGCACAGCTTACTCAGATTGTAAACAGCCTGATGCCATCTTTCTGTGCCTCTCCTTCCTCGTCGCCTTTGTCTA

Function

GO:

id name namespace
GO:0000123 histone acetyltransferase complex cellular_component
GO:0044545 NSL complex cellular_component
GO:0035035 histone acetyltransferase binding molecular_function
GO:0046972 histone acetyltransferase activity (H4-K16 specific) molecular_function
GO:0043995 histone acetyltransferase activity (H4-K5 specific) molecular_function
GO:0043996 histone acetyltransferase activity (H4-K8 specific) molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-473 Predicted to enable histone acetyltransferase binding activity. Predicted to be part of NSL complex. Orthologous to human KANSL1L (KAT8 regulatory NSL complex subunit 1 like).

Ensembl:

ensembl_id ENSDART00000148262

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073476 lncRNA upstream 119281 38615603 ~ 38618331 (+) True XLOC_037344
TCONS_00073469 lncRNA upstream 266805 38470041 ~ 38470807 (+) False XLOC_037341
TCONS_00073463 lncRNA upstream 316576 38420012 ~ 38421036 (+) False XLOC_037338
TCONS_00073462 lncRNA upstream 319501 38412748 ~ 38418111 (+) True XLOC_037337
TCONS_00073455 lncRNA upstream 429042 38307686 ~ 38308570 (+) True XLOC_037333
TCONS_00074931 lncRNA downstream 1118479 39863253 ~ 39865672 (+) True XLOC_037353
TCONS_00073518 lncRNA downstream 2335320 41080094 ~ 41083181 (+) False XLOC_037363
TCONS_00073517 lncRNA downstream 2335320 41080094 ~ 41083181 (+) True XLOC_037363
TCONS_00073527 lncRNA downstream 2493467 41238241 ~ 41240872 (+) False XLOC_037366
TCONS_00075179 lncRNA downstream 2493467 41238241 ~ 41246508 (+) False XLOC_037366
TCONS_00073485 mRNA upstream 30102 38684871 ~ 38707510 (+) False XLOC_037347
TCONS_00073483 mRNA upstream 30102 38684871 ~ 38707510 (+) True XLOC_037347
TCONS_00073481 mRNA upstream 55375 38644976 ~ 38682237 (+) False XLOC_037346
TCONS_00073480 mRNA upstream 70301 38644976 ~ 38667311 (+) False XLOC_037346
TCONS_00073482 mRNA upstream 89771 38645136 ~ 38647841 (+) True XLOC_037346
TCONS_00073490 mRNA downstream 138614 38883388 ~ 38959196 (+) False XLOC_037350
TCONS_00073491 mRNA downstream 143251 38888025 ~ 38967999 (+) False XLOC_037350
TCONS_00073492 mRNA downstream 217243 38962017 ~ 38993033 (+) False XLOC_037350
TCONS_00073493 mRNA downstream 217624 38962398 ~ 38989473 (+) False XLOC_037350
TCONS_00073494 mRNA downstream 222474 38967248 ~ 38991000 (+) False XLOC_037350
TCONS_00073484 other upstream 30102 38684871 ~ 38707510 (+) False XLOC_037347
TCONS_00073453 other upstream 425865 38292947 ~ 38311747 (+) False XLOC_037333
TCONS_00073451 other upstream 450824 38279383 ~ 38286788 (+) True XLOC_037332
TCONS_00073445 other upstream 575963 38158798 ~ 38161649 (+) True XLOC_037329
TCONS_00073489 other downstream 42154 38786928 ~ 38787044 (+) True XLOC_037349
TCONS_00073497 other downstream 265658 39010432 ~ 39011384 (+) False XLOC_037351
TCONS_00073498 other downstream 265671 39010445 ~ 39014598 (+) False XLOC_037351
TCONS_00073499 other downstream 266452 39011226 ~ 39013435 (+) True XLOC_037351
TCONS_00073504 other downstream 1392723 40137497 ~ 40137612 (+) True XLOC_037354

Expression Profile

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