RNA id: XM_039794192.1


Basic Information

Item Value
RNA id XM_039794192.1
length 2723
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC120555491
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1308822 ~ 1311760 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTAATAATGGTagtattttatttacagtgaGTATGGCAAACGAGAAGGAagcgagaggagaggagagagggagaaggaaagagagaggaagtgagaggagaaggaaggatgagagaggagacaagcagaggagacaggaagtgagagAACAGGTGAGGAGAAAGGAATGCAGAGGAAATGAGAGGAGACAGAacgagagaaaagagaggaggagcaaGGACCAGAGAGGAAAGGATACAAAGATAAAACAGGGAGGGAAAGGAAGGCCAAACAACTACAATCtgtggaaagaggagaggatgaaGGGTGCCTTAGATGAATACAGGGAGGGAGTGAAGAAAGGAATTACAGTGAGTGTGCACTTCTTATCACGAGCATGGGGTGTGCCGCGATCCACACTGCAAAGACGCATCAGCGGAAAGGTGACTGGCAGTGAACATGTGTCAGGGCGGAAGCCCTACCTTCCAGAGGAGGCGGAAAGGGAGCTTGCTGCCACCCTCAAGACATTGGCGCAGAGGGGGTTTCCCTTCACAAAGCGTGATGTCCAGCAAGTGGCCTTTGATTTTGCAGCCAACAACGACATATCTGGTTTCTCCCTGACAGCAGGAAGGGCCGGATATTACTGGTTTCAGAACTTTCTAAAGCGAAACCCAGAGCTTGGGATGCGCAAGCCAGAGGTCCTGTCTGCAGCACGGGCTGCTGGACTTAACAAAGAGGTGGTTAGCCAGTGGTTTAACCAGTATGAGAACCTTTTGGTCGAGCTGGGTATTGAGGGCACACCGTCACATATATGGAACTGTGACGAGTCTGGGCTTCAGGACCAGTTCAGTTCGACAAAGGTTGTTGGACAGGTTGGCCAGCCATGTGTGGAGGTGTGTGCCGGAGAGAAGGGGGAGACAACAACTTGTCTGGCAGCGTTCAATGCAGAAGGTACATACAGTCGaacaataattatttttaaggGGAAGCGTGTTCGTTCTGAGTGGCTACAGGGATGCCCGGAGAACACCAGCGTAAGGTGTTCAGACAATGGCTGGATTACCTCTGACCTCTTTCTGGAATGGGGTCAAATGTTCATTCAGTCCCTCCCCAGGGATGACCCCAGGCCCCATCTTCTCCTCCTTGACGGCCACAGTAGCCACGTCTATAATCTGGAATTTATTAAGCTACTGAAAAGCAAGAATGTGCACATCATGTGCTACCCTCCCCACACAACCCATGCGCTGCAACCGGCGGACAAGGCCCTCTTCAAGAGTCTAAAGCACCACTGGGACCAGGAAGGGAGGAAGTGGACAAGGATGATGGCTGGGCAGAAGCTGTCAAGGATGGAGTTCTTTGCGGTGTTCAGCAGGGCTTGGGCAAAGGCTGCCACTATTGAAAATGCCCAGGCAGGGTTCCGGGGGACAGGGATGTTCCCTCTCAATAAAGATATTCTCCCTGAGACTACTTTTGCCCCCAGCAAGACCACCGAAAGAATGCTACCATCCACTCTACCATCCCCGCCCACAAGGCTGCAGTCTCTCCCACCCCCGCCCACTAGACCATGGTCGCCCCTGCTGACCTTGACCCACTCTGCCCGCCAGCCATCAGCCCTGCTCTCTGGACCTCAGCCCTCCCACCCGCCAGCCAGACGTCAGTCGCCTGCCGATCCGCCAGCCAGACCTCAGTCCTCTGCTTCCCTGACACCCCTGCTACCTCGGGAACCACTGCACTTTTTCCCAGAAGATGAGGTGGTGCTTGAAGAGGTTGTGTTGGAGGATGTACCGGaagaagataatgacctcttcaaTCAGTTCACACCACAGGAAGAAACCCACTCCCAGGATGAGGGACCTTCAACCTCCACATCTGTGAGATCGGTCACATTCAATGACTTGATCTCAATGCCGCAAAGGGAGAGGGCCATCAGAAAGAGAGTGAAGCCACCATCGTATAACCTAACAAGTGAGCAACACATTGAATAtattcaaacaaaaaaatcatccaGCAAGCATCCAGCCAAGCAAGCCAGCTGGTACCCGGGCAGCAAGCAAccgaaagggaaaaaaaagcagggcAAGAGAAGCAAATCACcttgcaaagtctgcaacaccCACTATGGTGACCCAAATGACCCTAAGGCTACTGAGgaatggttaaaatgtgttcCATGTTCTGCCTGGTTTCATGAGAGCTGTGGTGAAGACAATGGTATCTGTGCTGACGATGGTTTCATTTGCAAAGACTGTGTTTGAAAAGTTTTCACACAAACATATCAGTTAATAATTTGGAATGtgaatttttgtatttttgtgaatgcacATTTTGTTCTAAATGtgttgttcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccactgacaGTTCACTGATCTATGCTGTTCcaaaatggatttttttaattgcacatttgAATATGTGGGTTTGcacccaaaatgttttttgaatgGCACATATGAATTTTTGTTTAATGCAGTTTAAATGTTATGTGGCTGTATAAGCAACtgtgttttaaaattaaaattgatgATAAATGACTATTTCCCTTTGGAGTTTGActggcccattttacctgaagctgtggcccattttacctgaaACTGCTCATGCAACAAATGTTGGCAGAGCTGATGTTTCAAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33613 lncRNA upstream 5870 1302719 ~ 1302952 (+) True G24991
TU33606 lncRNA upstream 50006 1258519 ~ 1258816 (+) True G24984
TU33594 lncRNA upstream 54231 1253197 ~ 1254591 (+) True G24972
TU33533 lncRNA upstream 123595 1184725 ~ 1185227 (+) True G24926
TU33526 lncRNA upstream 130641 1175326 ~ 1178181 (+) True G24920
TU33637 lncRNA downstream 74288 1386048 ~ 1386264 (+) True G25011
TU33634 lncRNA downstream 101335 1413095 ~ 1415747 (+) True G25008
TU33792 lncRNA downstream 457522 1769282 ~ 1774440 (+) True G25144
TU33862 lncRNA downstream 871046 2182806 ~ 2183770 (+) True G25203
TU33866 lncRNA downstream 871046 2182806 ~ 2183770 (+) False G25203
XM_039794041.1 mRNA upstream 39819 1262950 ~ 1269003 (+) True LOC120555381
XM_039794042.1 mRNA upstream 39819 1262950 ~ 1269003 (+) False LOC120555381
XM_039793914.1 mRNA upstream 56921 1246885 ~ 1251901 (+) True LOC120555232
XM_039793907.1 mRNA upstream 68365 1228417 ~ 1240457 (+) True glo1
XM_039793897.1 mRNA upstream 81164 1204494 ~ 1227658 (+) True eprs1
XM_039795697.1 mRNA downstream 688 1312448 ~ 1364726 (+) True LOC120556244
XM_039796055.1 mRNA downstream 66250 1378010 ~ 1385075 (+) True LOC120556440
XM_039796056.1 mRNA downstream 66250 1378010 ~ 1385075 (+) False LOC120556440
XM_039795404.1 mRNA downstream 362981 1674741 ~ 1698359 (+) True zgc:165481
XM_039795363.1 mRNA downstream 478193 1789953 ~ 1817994 (+) True slc7a10a
TU33826 other downstream 527573 1839333 ~ 1842811 (+) True G25173
TU33868 other downstream 770198 2081958 ~ 2083319 (+) True G25204
TU34144 other downstream 2473173 3784933 ~ 3785542 (+) True G25431
TU34243 other downstream 3258613 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 4722449 6034209 ~ 6035193 (+) True G25708

Expression Profile