RNA id: TCONS_00073490


Basic Information

Item Value
RNA id TCONS_00073490
length 1437
RNA type mRNA
GC content 0.51
exon number 6
gene id XLOC_037350
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38883388 ~ 38993033 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTGATTCTGAGGAGAGGATGCTGGTGTTTGTTGCACTGAGAGACTCATCAGGGCCCTGACGCCTCCTTTTAAATACGCCACCAATCATCGCTGGAGCACCACCAACACCTAGACAGGAGTAAGGAGTGACCCCTCTCCTCTGGTTTAGATGGCAGACGGTCGGCAGCCCGAGGACAGTGGCCCCCAGTGGTCATCTCCGGGAGCCCAGGGCTCATCCTCCCCAGGTGGGCATGGAGAGAATGGCTTCTCTTCCTCCTACAGGACCTGTCAGCCGGGCGCTGGTTCTGCCACTTATGCCAAAGAGAATGGCTTCAATGGAGACCTCACCTCTGGACATGCTGTAACTGCTGAGCAAGTGTCGGCGCGGATCGTGCAGGAGGTTACGGCTGAAGCAGTAGCGGTACTGAAGGGAGAGCAGGAGCTGCATCCGGAAACTGCCGTCAGGCTGCCATCAGTGGAAGACTCCGCAAACCTGCCGCCCTCACCTCCTCCGTCTCCAGCAGCAGAGCATTTCGGGCCTTTGGATCAAGAAGAGGAGACCATAGAGAGTCTCTCAGCTgcggaggaggaagaggaggagactTCAGAAGCCGCAGCCACAGCAGCAGCTctagaggaagaggaggaggaggaggaggaggatgatgagGAGGAGCAGTGGAGTGGGGAGGAGCCTGAGCAGGAACCCCCATCTGAGCTCCTAGAGCGGGCAGAGGTCATAGGCGAGGCCCAGGCTCTCTCTGGCCTGCTGGCCGATGTTCACACACAGGCAGCTACTGCTGCTGACGAGGCTCCTAATGGGAGAGCTGAGGAGGCAGGGGGGCAAGAAAGCCCTACAGAAGGTGTGTCTATCCTTCTCCCGACCTGCATGCTTCTCTCTCCCTTCACAAAATAAGCGAAAGCATCGTGAGAGCTTTCTAAGGGAAtgtgggctcaaatatctcctcTATCTGCTAATGCTGCAAGGCAACACAGGCTTGATGGTGACCAGCTTCTGTGGCCAGagctatgtgtctgtctgtcattgTCTTTCTTCTTAAATGCTTTTCCCAGAGCAGCTGTCATCTGCTAGCTATCTGATGAAGCTTTTTCTGAACCTTTCTGCTTATTTCTGTATTGATGCTACTGCTGCCAGGTCGACCGTTTTCATATGTTGTTATCCattgctcatttatttttatttgccagCTACATTGCCAGTTTGTGGGTGATTTTTGCTGCATGCTCCAACAAAAcacctgcatttttttttcatgtgggatTCTGTGAATCCTCTGCGGTTTGTGATATTGTGATATTGTTATGCTTCATTTTCAAAGGCATTTGAAAAGCCAAGCTTGTTGATTTCATTTAAATGTGATTTCTATCAttaattttgctttttatttttcaaagcattgtcATTTCATGTGgtttacattaaaatgttcatttta

Function

GO:

id name namespace
GO:0001578 microtubule bundle formation biological_process
GO:0021954 central nervous system neuron development biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0031175 neuron projection development biological_process
GO:0043005 neuron projection cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0015631 tubulin binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-041010-118 Predicted to enable microtubule binding activity. Predicted to be involved in microtubule cytoskeleton organization and neuron projection development. Predicted to act upstream of or within central nervous system neuron development and microtubule bundle formation. Predicted to be located in cytoplasm and microtubule. Predicted to be active in neuron projection. Is expressed in brain and central nervous system. Orthologous to human MAP2 (microtubule associated protein 2).

Ensembl:

ensembl_id ENSDART00000135902

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073476 lncRNA upstream 265057 38615603 ~ 38618331 (+) True XLOC_037344
TCONS_00073469 lncRNA upstream 412581 38470041 ~ 38470807 (+) False XLOC_037341
TCONS_00073463 lncRNA upstream 462352 38420012 ~ 38421036 (+) False XLOC_037338
TCONS_00073462 lncRNA upstream 465277 38412748 ~ 38418111 (+) True XLOC_037337
TCONS_00073455 lncRNA upstream 574818 38307686 ~ 38308570 (+) True XLOC_037333
TCONS_00074931 lncRNA downstream 904057 39863253 ~ 39865672 (+) True XLOC_037353
TCONS_00073518 lncRNA downstream 2120898 41080094 ~ 41083181 (+) False XLOC_037363
TCONS_00073517 lncRNA downstream 2120898 41080094 ~ 41083181 (+) True XLOC_037363
TCONS_00073527 lncRNA downstream 2279045 41238241 ~ 41240872 (+) False XLOC_037366
TCONS_00075179 lncRNA downstream 2279045 41238241 ~ 41246508 (+) False XLOC_037366
TCONS_00073486 mRNA upstream 108985 38712474 ~ 38774403 (+) False XLOC_037348
TCONS_00073488 mRNA upstream 111661 38737924 ~ 38771727 (+) True XLOC_037348
TCONS_00073485 mRNA upstream 175878 38684871 ~ 38707510 (+) False XLOC_037347
TCONS_00073483 mRNA upstream 175878 38684871 ~ 38707510 (+) True XLOC_037347
TCONS_00073481 mRNA upstream 201151 38644976 ~ 38682237 (+) False XLOC_037346
TCONS_00073492 mRNA downstream 2821 38962017 ~ 38993033 (+) False XLOC_037350
TCONS_00073493 mRNA downstream 3202 38962398 ~ 38989473 (+) False XLOC_037350
TCONS_00073494 mRNA downstream 8052 38967248 ~ 38991000 (+) False XLOC_037350
TCONS_00073495 mRNA downstream 8802 38967998 ~ 38975028 (+) False XLOC_037350
TCONS_00073496 mRNA downstream 24699 38983895 ~ 38991366 (+) True XLOC_037350
TCONS_00073489 other upstream 96344 38786928 ~ 38787044 (+) True XLOC_037349
TCONS_00073487 other upstream 138614 38737612 ~ 38744774 (+) False XLOC_037348
TCONS_00073484 other upstream 175878 38684871 ~ 38707510 (+) False XLOC_037347
TCONS_00073453 other upstream 571641 38292947 ~ 38311747 (+) False XLOC_037333
TCONS_00073451 other upstream 596600 38279383 ~ 38286788 (+) True XLOC_037332
TCONS_00073497 other downstream 51236 39010432 ~ 39011384 (+) False XLOC_037351
TCONS_00073498 other downstream 51249 39010445 ~ 39014598 (+) False XLOC_037351
TCONS_00073499 other downstream 52030 39011226 ~ 39013435 (+) True XLOC_037351
TCONS_00073504 other downstream 1178301 40137497 ~ 40137612 (+) True XLOC_037354
TCONS_00073505 other downstream 1318951 40278147 ~ 40278263 (+) True XLOC_037355

Expression Profile

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