RNA id: XM_039794210.1


Basic Information

Item Value
RNA id XM_039794210.1
length 1495
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC120555501
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6493937 ~ 6495721 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGCCACAAAGGCTTTAAGTACTTAAACACAGCAGCTCGTCTCCTCAGAAAGACAAGACGAACTATCAGAAAAAAGACACTGACAACAGGACTCTTGTTGACTTGTTGCCTAGAAACAAAGACACCATGGCTGTACAGCTCATGTTTACTCAGGATAACCGGGACCGGATACACGCTGTGGAGAACTCATTTGGGCCCAAGGTGAAGCCCTTGTCCAAGCCGGGTCGGGTCCTGATCGGAGAGGGCCGGCTGATGAAGCTGAGCCGCAGGGGGCCGCAGCCTAAAGTCTTCTTCCTCTTCAACGATGTGCTGGTGTACGGCAGCATCATTCTGAACGGCCGTTGGAACAAAAAACAGAAGATCATTCATCTAGAGGACATCCAGCTGGAGGACTTGGAGGACAGCGTGACAATGAGGAACCAATGGTTGATCCGCACACCACGCAAGTCCTTCTACGTGTCAGCCATCTCAGACAAGGAGAAGCGAGCCTGGATGGAACACATCGAGGACTGGCGGTCCAGACTGGTGCAGAGCGGTGGCTGCAGGCCCGGCTCCACCTTCGCTGTCACCTGGATCCCCAACCATGCCTCTGCGGTCTGCATGCGCTGCTCCGATAAGTTCACCATGGCCCAGCGGCGACACCACTGCCGGAGATGCGGTTTCGTGGTCTGCTGTGCGTGCTCCAAGAAGCGAGCGGTAATCCAACACATTCACCCGACTAAGAGGTTGAGGGTCTGCACCACGTGTCACTCGAGTCTTTCCACGACGGACGCAAAAACCCAAGAGATGTCTCGTCAGAGGGGAGACAGCACAGAGAAGATCGGTTCGGATGAAGATGAACTGGAGGGATccagtgaggaagaggaggcagaggagcagATGGAGGACCATGACCCCAGCAGGTGGATGGAGACCCAGATGGACTCCTGGTCCCCATATGTCTACCTTAAACCAGACCATTTGAGGCCCCAAACATGAAGCACACCAAGAGTGCTGCAGCCACTCAGAACGCACCTGGCGTTGGTCTTTCTATAACATGGACACAACACTGATGCAGCTTTGTGCAGTCAGTCATGAACATAACAAGACAATAATGTATTAAGTTAAATTATTttgtacatactttatttaTTGATGTGAATAATTTGTCTGTTCACATTGTGCTGTTTGTGGGAACACTGCTGCTGTGAAGTCCTTGATTTGCTCTGATAATGTGGTCAGAGGATTTGGAGTAGAACACTAAAGCTAGGTCTCAGTCTGCCTTAGTCTGACTAGATTTTAATTTAAGACTACCTCCTGTGGAAAGGACATCCTGGGATTTCTAGTGATGTCACACAATTGTGGGTGTGGCCAACAGAACACTTCTTCTGCAGCAAAAACTTTGATGAATTTATATTGTGTAAATGTATAGTGCTGTGCATTTTGTGGAAAATATTGCCCTGACATCCACTACAAGggtcatgttttaaaaatgaaataaataacttttttgagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34627 lncRNA upstream 65677 6428058 ~ 6428260 (+) True G25797
TU34614 lncRNA upstream 98231 6390599 ~ 6395706 (+) True rwdd3
TU34500 lncRNA upstream 213150 6278701 ~ 6280787 (+) True G25713
TU34494 lncRNA upstream 455968 6036859 ~ 6037969 (+) True G25710
TU34492 lncRNA upstream 458148 6035456 ~ 6035789 (+) True G25709
TU34657 lncRNA downstream 33797 6529518 ~ 6532184 (+) True G25824
TU34660 lncRNA downstream 94474 6590195 ~ 6590618 (+) True G25827
TU34687 lncRNA downstream 145729 6641450 ~ 6641983 (+) True G25850
TU34729 lncRNA downstream 478614 6974335 ~ 6979755 (+) True G25888
TU34737 lncRNA downstream 491791 6987512 ~ 6991931 (+) True G25893
XM_039796247.1 mRNA upstream 99133 6382570 ~ 6394804 (+) False rwdd3
XM_039796246.1 mRNA upstream 99135 6382571 ~ 6394802 (+) False rwdd3
XM_039795724.1 mRNA upstream 182797 6295097 ~ 6311140 (+) True mtch2
XM_039794284.1 mRNA upstream 227229 6262410 ~ 6266708 (+) False LOC120555541
XM_039794097.1 mRNA upstream 461783 6026435 ~ 6032154 (+) True fadd
XM_039795921.1 mRNA downstream 498235 6993956 ~ 7005678 (+) True LOC120556365
XM_039795696.1 mRNA downstream 691008 7186729 ~ 7211577 (+) True bnc1
XM_039795970.1 mRNA downstream 736827 7232548 ~ 7290870 (+) False sh3gl3a
XM_039795971.1 mRNA downstream 736827 7232548 ~ 7290870 (+) False sh3gl3a
XM_039795969.1 mRNA downstream 736827 7232548 ~ 7290869 (+) True sh3gl3a
TU34538 other upstream 204161 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 204161 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 205860 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 227229 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 441040 6052815 ~ 6052897 (+) True trnal-uaa_1
TU35083 other downstream 2257980 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 2573008 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 3071110 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 3351556 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 5535900 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile