RNA id: XM_039794226.1


Basic Information

Item Value
RNA id XM_039794226.1
length 8798
RNA type mRNA
GC content 0.52
exon number 37
gene id baz2ba
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19373981 ~ 19444669 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGTAGTGAGCTGACGTCAGGTCGGTTCCTTGAAGTGGAGCTGAATAAACCTTGAGAAGAGTCTCCTTCAATCTGCTGTTagtaactaacacacacactcacacaccgaGACTCAATTACTGCCCAATTCCCTTCTTTATCATTCGTCCCCGACCTCTTTTTCGTAACCAAAACCGACCAAGGAAACAAAGAGGCGACAAGAAGACCGAACCGAAGTGTTAGTTGAACTAAAAACCCACGTTGGAAATAAGTAAAGTGTCGAAACTAAAAAAAGGTGTTACAGCAGTTATGTCAAAGAGCTAAAGACAACTAACAATATGGAGTCTGGAGAGCGGCTGGCCTCCCCTGCGCCCACCCTGTCTGCTGCTCGCACCTCCTCCCCTGcggcctcttcctcctcctcctcttcttcctcttcatcatcccCTGCTCCCCACTCTAAGAGCAGCATGGCCCCGAGCCCCTCAGCACTGGGATCCACCCTCAGCACCTCTGGCCGTCTGTTTGGAGCAGCAGGAGAGCAGCCCTTCATAGGCTCCACATTGTCAAGTGCCTTCCCTCTAGTCAACCACCCAGCCTTCGGAGCCCTCTACAGTACCGGAGCAGGCAGGCCTGAGTTTGGAGGCCTGGGTTCCCTAGGCATGTCAGCTGCTCTGGCTGCCCACCCTCAGCTGGGAGCTCTCTCTGCAGAGTGGTGGCGAGCTGCTGAAGCCCATGGACGGGGAGCTGCTGCCTTTCTACCCTCTTTCATCAGCTTCCCTCCATTCTTCACCCCTCACATTCAGCCCAACCACAGCGCCAGTCCTGTTCAGATCAGGATGCCCAGCAAGAATAGCCATGCCCCACCCAAAGGGGTGAATGGGGCAGTGAATGGCAGCGGGGTCTGTCCTCCCACCACACAATCAGGGAGCTTTTCTGCGAGTCCGGCTCCTGTTCAGGCATCGACTAAGCCATCCAAAAAGTCAGACCCTTCTGATAGTCACCGTAGCAGCCCTAAGAGCAATCCAGATTTGGTGGAAAAACCGATCCACAAAACTAAGGAGAAGAAGCAACGGAAGAAGCCAGCAGACACTTGTGTGGCGAGCAACAGTGAGTCAGGCACATCCTCAGACAGCTCAAGTGACGGGTCCCTCAGCAGTGATCTGGAAGACTTAGCAGAGGATGacgaagatgatgatgatgacgatgaggATGACGAAGAAGAGGACAAACAGAGTGAATTGTCAGACTCTGAGAAGCGGACAAGGAAGAAAACAAAGGTTTTGATACCGGGTACTGGAACTGCAAAGACTGACAGACCACTCTCTGGGGAGCTCCATGACAAGAAAGACACCCAGGCTCACAAGGTCTCCTCCAAGCCCCCAAACCTTGTGCCCTTACCCTGCTCTGCCTCCCCTCCTGCCTTGTCCCAAACGGCGCTGCTGGCCCTGCACAGCTCCAGGTCCTGGACAGAGAGCCCACAGCAACACTTCAGTGTGATCCAGTCCACTGGCCTGGCTGCCAACTCAAAGCCCCTGGCACTGCTCTCTCAGCCCCGTAGGGAGTCTTCACCGTCTTCCTCCCCCATAGCCCTCACCACATCTCCAAAGGCACTCTCCAGCACTGCCTCTCCCAAACCTCCCAAACTGctgccctcctcctccccacagCACCTgcccctctccctctgctcctcccCTAAGCCTCACTCAGTCCCCTCTCCGCCCCACTCGACTTTCCCGCTGTCTACCTCCGCAAAACCCTTTGGTTTGACCTCATCTGCAACAAGCTCCCAGAAGTCCTCGCTGAAGCCACCTCGGCGCACTGTTCCTGGCTCTGGTAAATCCAACAAGAAGAAACAGCTGGAAGCTTCACTTGCGCAGATCAATGAGTTCAGGCTAAAACAGACCCTCATGTCCCAAGGGCAGACTTTCCCAGCTGAGCTAaagaagcagcagcaggggccAAACAAGTCTCCCAAGAGGACGTCTCTGTCTTCATCGCCATTGCCACCCGCTCCGCCTCCTCCACCCCAGAACAATCACTCCAACCTCTTCCTCTCGAGTGCCCTGCTGGGGCTCCCTGAACCTCACCACCCCAATGGAGTCATCCAAAGCATCACTCAGGACGCACCTTTGGCCCTCATCACAAAACCTCGCAAAGACTCTGCCTCTCATGGCAAGTCCCCTCAGTGTGACTCCGATGCTGGCTCGATGCCTGTCAATCTGAGCACAGGGGCGAGCAGGACCCAAACTACTGCCCACTCTGGGCCTCCGTCACAGCCCTCCACTACCTCACCCCATGTCGCAGGCCATGGATCCAGAAAGAACAAGACCACTAAGGGTAAGGGACAGACACCAGGGCTGGGACAGACACCAGGGCTGGGACAGACACCAGGGCTGGGACAGACACCAGGGCTGGGACAAGCAGACCctttagctgcctggaagggtTTCTCTCAGAACCATCTGGTACAGTCTCTAGTAGATTTGTTTCGTGGAGGAGAGCCCGGGATCGGGATTCCTGGAGTTAGTATACCTGGAGTTGGAATTCCTGGAGTGGGGATCCCTGGGACATGTAACCCCACAGCTGGTCTCCCGGCTAACAAGGAATCTGACGACTCGGGAGACGATGACGATGATGAGGATGACGACcttgaagaggaggaggaggaggaggaggatgaagaggactcAGATGATAGTCTTTCAGAGTCTGATAGCAATTCAGACAGCGACATCTCTGGGAAGAAAGTGAAGGAGTTAAAGCTGCTGCCGTCTGGATCATCTAAGAAGGAGATGACTCCCCGTAGGCTAACCAAAGGCCCAGAACTACTGAACACCTCAACCAATCACACCGCCACCAGCTGCTCCCCTCTCAACCTACAGGTCATCAAGACTCCCACCATTGTCACCAGCTCCAGTGCCTTGGCCTATCACAGCTCTCCAGGCTCTTCCTCCTACAGCCTAGCCTCTCCATTAGGCTtagggaagaggaagagggtgATGGATGAGAAGGAGTTGATGATACCTCTGGAGTTGGGGTGGCGGAGAGAAACAAGAATCAAATCAGTGGCTGGGCGATCGCAGGGAGAGGTGGCCTACTACGGCCCGTGTGGCAAGAAACTAAGGCAGTACCCAGATGTGATGAAGTATCTATCCAGAAATGGAATAAGTGGCATCACGCGCGATAATTTTAGCTTCAGTGCAAAGATAAGGGTTGGTGACTTCTATGAAGCCAGAGAAGGACCCCAGGGTTTACAATGGAGCCTGTTGAATGAAGAGGAGGTCATTCCTCATATTTTGGCGATGGAAGGCCGTAGGGGCCGCCCCCCTAGTTCAGACCGCCAGTTAGCGGGCGAAGGTGGCAAAGGTTCCCGACGGAGGAAGGGACGGCCCCCTAATGTGGGCGATCCACTGGTGCCCGAGGGCCCCAGTCCCAGTGAAGTCAAACTCCTGCGCAAGCTAGAGGCTCAAGAAATAGCCAGACAGGCGGCCCAGATGAAACTGATGAGAAAACTGGAAAAGCAGGCACTGGCGCGTGCAGCCAAAGAAGCTCGGAAACAGCAAGCTATCATGGCagcggaggagaggaggaagcagAAAGAGCAGATCAAGATCCTAAAGCAGCAGgaAAAGATCAAGCGCATTCAGCAGATTCGGATGGAGAAGGAACTCAGGGCGCAGCAAATTTTGGAGGCCAAAcggagaaagaaggaagaagcCGCCAATGCCAAAATATTGGAGGCTGAAAAACGGATAAAGGAGAAAGAGTTGAGGAGACAGCAGGCGGAGATTCTCAAACATCAGgagagggagaggaggaggcaaCATATAATGCTGATGAAGGCTGTTGAGGCTCGCAAGAAAGCAGAGGAGCGTGAGCGCTTGCGGCAGGAAAAAAGGGATGAGAAGCGACTGAACAAAGAGCGTAAACTGGAGCAACGAAGGCTGGAGCTGGAGATAGCGAGGGAACTGAAGAAGCCAAATGAAGACATGTGTCTGTCTGATCATAAGCCTCTCCCCGAGTTCTCCCGGATTCCTGGACTCATCTTACCAGGACGTGCCGTGTCTGACTGCCTGATGCTGATGCAGTTCCTGCGAGGCTTCGGGAAGGTTTTGGGGCTTGATTTGAATGCGGATGTGCCTACCCTGGGCATGCTCCAGGAGGGCTTGCTCAACGTGGGGGACAGCATGGGCCAAGTCCAAGACCTTCTGGTCAAACTGCTTTCTCTGGCAGTCTGTGATCCCGGTTTGCCACCTGGACAAAAGACTAAAACCATGCTTGGGGACCACCTGACCAATGTTGGCATCAACAGGGATAATGTGTCTGAGGTGCTACAGATGTACATGGGAGCCCATTGTGCCAATACAGAGCTGGCCCCTCTGGCCCTCAGTCTAAAGACCAAGGCCTTCCAGGCTCACAAGCCTACCCAGAAGGCCTCAATCCTGGGCTTCCTGGCTAATGAGCTGGCCTGCAGCAAAGCTGTTATCAGTGAGATTGACAAGAACCTGGATCAGATGGCAAACATGAGGAAGGACAAGATCATTATGGAGGGAAAACTGAAGAAGTTGAGGACCATTCATGCCAAACGTACTGGGAGGAGGGAGGCCAGTATGGGTGTTGAAGAGAACCAGTCTATTGGCACTCCGTCCTCTGCCGCCAAACGCAAGAGGAAACTGGGCGGAGACAGcgacgatgatgatgacgacgatGACGACAGTGATGAccaggcagaggaggaggaggatgaggaggaggaagaaatgAAGAAGGTTAAAAAAGTGGAGACATATGATgagGATGAAGTCGACCAAGCCACCAGTCTGGAGGAGCTGGAGAAGCAGATAGAGAAATTAGCCAAGCAACATCATCAGACCAGGCGAAAGCTGTTTGAAATATCCCATTCTCTACGCTCCATGATGTATGGCCAAGACCGTTACCGCCGCCGGTACTGGGTACTTCCCCACTGCGGAGGGGTCTTCATTGAAGCCATGGAGAGTGGAGAAGCTCCAGAGGAACTGGAGGAGGAGCgacagagaaggaggagagcgGCAGAGGAGGTCCAGGTCAAAGAGGAACCTCAGGAGATCGAGTTGCAGAAGGAGAACGCCACCAACCTCGATGGGCAGAGCATTAGAACACAAGGCTTGGAGCAAGAGAAcgaagaggaaaaggagaggaagaaaaacgCCACGGCCCTCTTCTACCAGCAGCCGGGCTACGATTCCAAACTGTGCACATTCCGGGACGACAGCAAGGACGTTGGCAAAGACACTGTGATGGCAGAGGACAAGGAGAGTCACCATGTGAGACAAAACGGCAGCCCTGTGGGCACTCCTGTTGTCACAAGCACAGTAACATCACCCTCCCCCATTCACAATACCTCTGAGCCGGCAGTAGCAAAAAAAACCTCCATGGTGACCATTAAAGACACTACAAACATCCCTCCCCTAGCCTCAACCTCTTTATCTGTCCCGTGCCTGCCAGTCCCACTTGAAAGCCCAGGGAACACTCCTCCAACCTCATCTCCGTACCTGTCATTCCAAGCCAACGACCAGCTACTCAGAGTCTTGACAGAGAGGAGCGGACACTGGTTCAGTCTGCTCCCTCGCAACCCCTGTGACGTCACTTCCATCACCACAACTCCTCCCGCAGCGCCCCGTGTGTCTCCCCAGGCCACCTCTACCCCAGCCAGGCCAAGATCCCCACCTCAGTCCCCTGCCCTGCCTCTCACCCCTTCTGCTGCTTCAGCCTCGGCCAGCCCGCACCACCCAGCTGGCCTCCTCAACTACCCACTATCAGCCCTGCAGGTGAAGGCAGGCGCTTCATTGCTAGGAGTTTCTTTCGGAAGCTGGCCCTGTGGCATGATAAGTCCCAGCCTGCCTCTGTGCAGCAGCCCTAGTCCCAGCCCCATGCTGGGTCACTCTCTGGAGGGCAACACAACAGCAAGTGTCTCCAGCAAGAGTGAATCCCCTTTACCTCGCATTGAAAAAACCTCATCCATACCCTCTCCTACCCTAGAGATGCCCAAATCCCTGGACCACACCACACCTCGGCCTATTCCAGATGAGATGCTGACAGGGTGGTGGCGGGTGTCTGACATCGAGGAGCTGAGGGCTTTGGTCGGTGCTCTCCACAGCCGAGGAATGAGGGAGAAGGGCCTCCAGAGGCAAATGCAGAAATACACAGAGATCATCCCCCAGGTCTGCACCAAACACAAAGACGTGGCCATGATCGAGCTGCATGAGCTGGAGGAGAGCCAGGTCAGTGTGGAGTCTGTGCGGGGCTGGTGTGTTGAGGAGCAGGCGATGGAGATGGACATTGCCGTGCTGCAGCAGGTAGAGGAGCTGGAGAGGAAGGTCACTGCAGCCAGCCTGCAGGTCAAGGGCTGGACATTTCCGGACCCTCAATCTGAGCGAGAGGACCTGGTGTATTACGAGCACAAGCCCCTCACCAAATTAACGCCAGCGTCTGCAAACGGGGGAGACAAGGACCCCAAGGAGCATCCTGAGGAGCGGGGGGAGAAGGGCGGGGTGATGCGTCACCTGGACAACCCGCTGGACATAGCAGTGACACGTCTGGCTGATCTGGAGCGCAACATCGAGAGAAGCGGTGAGGAGGAGGTGGCCCATGGTATGAAGGTGTGGAGGAAGGCGCTGACTGAAGTGCGTAGTGCTGCCCAGTTGGCCATGTGTATTCAGCAACTGCAGAAGTCTATCGCCTGGGAGAGGTCAATTATGAAAGTGtattgcCAGATGTGCAGGAAGGGGGATAATGAGGACCTCCTCCTGCTGTGTGATGGCTGTGACAAAGGCTGCCACACTTACTGTCACAAACCCAAGATCACCTGTATCCCAGAGGGAGACTGGTACTGCCCGGCCTGCATATCCAAGGCAAGTGGCCCATCTCCCAAAAACAGAAAACCTCCAAGCAAACCAGTAGCATCCAGCGCAGGAGGTGGTAAGAAAGGTGGAGAGGGGAAGAAGAACGTGAAGCAGGCAGGTAACGGGGAAGTATCGGAGGAGGACCCGGCCAGCGCCAGCAGCACGCCCAAGAAAGCAGCGAAAGACACCAGCAGGAAGAGGAAAACCGAGGAGAGCGCACCTGCTCTGCAAGCAGCCAATCAGGAgagccctgtgtgtgtgaagcGAGCCAAGACAGCTAGAGACAACAACAGGGACCTGGGATTATGCAGGGTACTCCTTGCTGAGTTGGAGCGGCATCAGGATGCATGGCCTTTTCTCACACCCGTCAACCTGAAATCGGTCCCTGGCTACAGGAAGGTCATCAAGAAACCGATGGACTTCTCCACCATACGTGAGAAGCTTGTGAGCAGCCAgtatCAAAACCTGGAGACTTTCATCATTGATGTCAACTTGGTCTTTGATAACTGTGAAAAATACAATGAAGACAATTCGGACATTGGTCGAGCTGGTCATAACATGAGGAAGTTCTTTGAGAAGCGCTGGACTGAGCTtctgaaacaaacaaactaaacgTCTGTACTGATTTTGCCCATAAacccattcaacttttcatatCGGAGCACCaggttttacttttatttttattttctgatgGAGATTGTGGCTTTGCAAGATGGAAGAAGTCAAATCCTTAATAAGGAACCCATGGTTTGCTTAAGAGAGATgtcacctttaaaaaaaaaaagaaaaaaaaaaaggttgttacATAAGGTGCGCTGGATTTTATTACAACAGGGATAAAAGCCCCAAAGAGTCCCAGAGAAATGGGGTGTCGTAGTGCAATACCATTCCCTGTCTCAGAACACTGCACTGAATAATCCTCAACTGTCACTGATGTGTCTGCGCTAGAATACTTTCCACTACTTGTAAATAGTCTTTTGTTATTTAATCGTATTATAGTGAATGTATTtaattttgtaataattatttATGAATCAAGGTCCACTTCATTTTCTATGAAAAGGAAGAATCAGCAGAACTGCTTTGAATTAAAAAAggaatgtgtctttgtgttatAATTTTTTCTCCCAAAATATCCAACAAAgccaagaaaaaagaaaaaaaactgtttacacTGTTCAGTGCTTTCGGGGCATCAGAGGACTGTTTTcatttgttcaaactgtaatacTGCATTTATTTACAGGAACAGCAGAGGAACAGTTAGACAATTGTGATTCATGTGTATATACTGTTTATTAATGTCAATATTATGTCTTGTTTGGAACGATGTGTAAAAAATTGTTTAAGAATATTAAGATATTGTTTATGCCTTAGAATGATTGTAGCATTCTATTTTAGTGAACGTGATGAAAACATTATCATAAATATTgtttgtacagtatatacatatcCTCTGCAAACACTGTGGTATCCTTAATCTTGGTAGTGCCTACCCTTCCAACAGGGGCATGTAGAGgatgttattgttttttgttttttttcattcttatgacgaaattctttttttttttatatgatttcAATTCAACAAGGCCTCCAAAGTTGGGACAGTGATACAGAAATCATTCCTCACCATCCatagcagaaaaaaaggaacaacAAGCATTCAGTTATGCTTCCATGATGCATTTCCTCGTAATCTGCCACAATACAGAGGACCTAAGGCCATTTGTAACCACTGTGTTGAACCTTGCTGTGTGTTGTGGCCTGATGGAGGCAGCTAGATTTTTTTGTACCCAAGTCAAGAGTACTTGAAGTTACTTTATTTAAGATATTGTGGAATAAAAGTATCATTCTTTTGTAGAAGCTTTATTTTTCACTAGTGTGTGGCACGGACCTATTAAAAGGATGTTTTTCAACGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37927 lncRNA upstream 29856 19323032 ~ 19344125 (+) True G28526
TU37890 lncRNA upstream 143353 19229955 ~ 19230628 (+) True G28492
TU37873 lncRNA upstream 175754 19196746 ~ 19198227 (+) True G28479
TU37867 lncRNA upstream 180716 19191772 ~ 19193265 (+) True G28474
TU37865 lncRNA upstream 182819 19190118 ~ 19191162 (+) True G28473
TU38003 lncRNA downstream 19541 19464210 ~ 19464532 (+) True G28571
TU38004 lncRNA downstream 20381 19465050 ~ 19465340 (+) True G28572
TU38005 lncRNA downstream 21643 19466312 ~ 19466524 (+) True G28573
TU38006 lncRNA downstream 21959 19466628 ~ 19468243 (+) True G28574
TU38007 lncRNA downstream 23635 19468304 ~ 19468663 (+) True G28575
XM_039794288.1 mRNA upstream 31404 19308523 ~ 19342577 (+) True ly75
XM_039794289.1 mRNA upstream 32892 19308338 ~ 19341089 (+) False ly75
XM_039794943.1 mRNA upstream 68069 19277153 ~ 19305912 (+) True pla2r1
XM_039794945.1 mRNA upstream 68069 19280883 ~ 19305912 (+) False pla2r1
XM_039794946.1 mRNA upstream 98176 19263785 ~ 19275805 (+) True itgb6
XM_039794267.1 mRNA downstream 1501 19446170 ~ 19458999 (+) True wdsub1
XM_039794269.1 mRNA downstream 1501 19446170 ~ 19458999 (+) False wdsub1
XM_039794270.1 mRNA downstream 1501 19446170 ~ 19458999 (+) False wdsub1
XM_039794268.1 mRNA downstream 1647 19446316 ~ 19458999 (+) False wdsub1
XM_039795788.1 mRNA downstream 67687 19512356 ~ 19520218 (+) True ercc3
TU37478 other upstream 805501 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 1631247 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3887560 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3927589 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 6136162 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 42577 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 53069 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 53424 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 67687 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 1266435 20711104 ~ 20761147 (+) True G28770

Expression Profile