RNA id: XM_039794245.1


Basic Information

Item Value
RNA id XM_039794245.1
length 2053
RNA type mRNA
GC content 0.50
exon number 10
gene id zgc:113276
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18899447 ~ 18909277 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCAAACTTTCAGGTCTACGACTGCACTGCAGCACTGTTTCCACCGTCTCAGAAGCTGGCACAAGTTGACAATCCAATCTCAACCAGaattgtctttgtgtgtgtgtgtttcagatggTGATACTGGATGTGTTAATAATAGGGGCTGGCCCTCATGCCTTGACCCTAGCTAGCTTGCTATCAAACCCTGACCCTGATCCAAATTCAGAACCTGGACATGACTTGCCCCTCTCCCTCCCGGACCCTCCAAGGCCTCAGACAAACCCAGAAACATCCAACAACAAACGCTGCAGTggcaagaagaagaggagggcgACAGCTGTCTCTGCAGGCCTGACACTGGAGGATCGACTAGCAAAGTCAACGATATCAGAGAGGATCAATTGCCCCCTGCTGAATCTCCGAGTGGTAGATTCCTATGGTGAGTGGACCACTCTGTGGGAGAGCCAGTTCACAGCTCTGAACATCCCTCATCTGCGCTCACACACACTGGTGCACACAGACCCTCTCAataagAAAGCGCTGCAGGAGTTTGTTTTAAAGTCTGGTCGTTCAGCGGAGCTTTACAGTCTTCCAGACCAGGTTTATATTCTggacaaaaatgcatttttcaaTGACACGAGGCTcggcaggaaggagagaaaacgTCTCAACATCACCTCGACACTCAATAAGAGTTTATCCTTCAGTCTGCCAGGAACCAAACTTAGTGTGGATTTCTTTAAAGATCAGGTGGAGAGATGCAACTTGGACAAGGTGCTGGTGAAGGGAACAGTGGAGCACATCACGACTGTGATTGAGGACAAGGAAGAGGTGAAAGAAGAGGATGACTGGATAAAAGAGGGTGAGGCCATGAGAGGGACTGAAAGGAAGAAAGTGAAGTATTTTCAAGTCCAACTTCAAGATGGCGTCATCCTAAAAGCCTGCCAGGTCATTATGGCGACAGGTCCAACCCGTGCCCAGATGGCAAACATCCCTCAATGGGTGAAAAGCATTGCAGAGCGTTACCCAGAGGAGCGTTTGCAACACACAGTGCACCTCATGCACAACCTGCCAACTGCTCGGCAAAAACTTAAAGACACAGATAATCAGCAACAGAAAGAGACTTTTCCCACTCAAGaattgtgtgtagtgtgtgagGCAGGGCAGAGAGTAATGGTAGTTGGTGGAGGTCTGACCAGCGCTCATGTGGTCTCAATTGCCCTGCAGCAAGGTGCCAGCCAGGTGACATGGGTCATGAGGAAGCACCTCCAGTTAAAGCAGTTTGATGTGGGCGACGTGGAGAGCCTGGTGGGTCGTTACTCCCACGTGGAGCACGGCATCAAGATGGATGGCCAAGCTTACCTGCGTCAGTTCTATAATGAACGGAGTCTCCACAAACGACTGGCTATGATTCGCCAGGCGAGGAAAGGAGGTGCCGTCACCCCTGAGGCCTACATCCACCTACAGCCTTTCATCCTGACTGGACAGGTGGACGTGAAGACATACTGTCAGGTGAGTGAGGCAAGCTGGTGCTACAGGGGCCAGGCCTGGAGTCTCTCCCTCAGCACAGGGGACCACTGGACTGGAGATATGATCTGGCTCGCCACCGGCTGCAAACTTGATGTCAAACAGGACCCGTTGCTTTCTGAAGTGATGAAGGAATTCCCCATTCAGGTGATAGACGGTTGGCCGTGCATATCAGAAAGCTTACAGTGGGCAGAAGGGTGCCCGCTCTACCTGATGGGGCAGTACACTGCTCTTCAGGTTGGACCTCATGCAGTCAACCTGGCCGGCGGACAGGCTGCCAGCATGCGAATCGCCAAAGACATCATGCGCCGTCAGCAACAGGACAATGCAGAGGCTTCTGAACTGAGTGGGGAGAAATCTAAAACCGAAGAATATATTAAACAGATGCAAGGCCTTTTATGGCTTTAACTTTACAATATAGCCCAAAGAACTGAGATGCACGTGTGTGAGCAGTCTAATATTCTTGTTGGCCTACTATGTGGCCTTGATGAAATGGATTGGACTTAAATAACTGCAGTGAAACCTGTGAAACCTTTTTGGGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638784.1 lncRNA upstream 52041 18846269 ~ 18847406 (+) True LOC120556026
TU37505 lncRNA upstream 283638 18607305 ~ 18615809 (+) True G28195
TU37504 lncRNA upstream 289569 18607305 ~ 18609878 (+) False G28195
TU37466 lncRNA upstream 454151 18444816 ~ 18445296 (+) True G28163
XR_005638782.1 lncRNA upstream 718246 18004828 ~ 18181201 (+) True LOC120555993
TU37774 lncRNA downstream 144847 19054124 ~ 19055004 (+) True G28393
TU37775 lncRNA downstream 148269 19057546 ~ 19057853 (+) True G28394
TU37777 lncRNA downstream 162543 19071820 ~ 19072036 (+) True G28396
TU37770 lncRNA downstream 173930 19083207 ~ 19087001 (+) True LOC120555697
XR_005638744.1 lncRNA downstream 177918 19087195 ~ 19091823 (+) False LOC120555698
XM_039796077.1 mRNA upstream 9945 18875952 ~ 18889502 (+) True ace2
XM_039795647.1 mRNA upstream 101664 18770382 ~ 18797783 (+) True scml2
XM_039795648.1 mRNA upstream 101664 18770382 ~ 18797783 (+) False scml2
XM_039795649.1 mRNA upstream 101664 18777004 ~ 18797783 (+) False scml2
XM_039795069.1 mRNA upstream 170725 18721369 ~ 18728722 (+) True rs1a
XM_039794031.1 mRNA downstream 809 18910086 ~ 18925628 (+) False pir
XM_039794030.1 mRNA downstream 810 18910087 ~ 18925628 (+) False pir
XM_039794033.1 mRNA downstream 989 18910266 ~ 18925628 (+) True pir
XM_039794188.1 mRNA downstream 16761 18926038 ~ 18931134 (+) False vegfd
XM_039794187.1 mRNA downstream 16770 18926047 ~ 18933824 (+) True vegfd
TU37478 other upstream 330967 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 1156713 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3413026 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3453055 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 5661628 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 577969 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 588461 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 588816 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 603079 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 1801827 20711104 ~ 20761147 (+) True G28770

Expression Profile