RNA id: XM_039794262.1


Basic Information

Item Value
RNA id XM_039794262.1
length 1431
RNA type mRNA
GC content 0.54
exon number 4
gene id mnx2b
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19164594 ~ 19168813 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACACCGAGACGGATGCAATGTTGCAGAGTGACATGTGCAGGTAGCTACGATTCAAGGAAATGGATGCAGGGATGAACAAGCAAACGCCACCTGAGCcttttaggaaaaaaaataaggagaaCATATGAGTTTGTGACTGAAGGAGGCTCCGCTGTCTGCGCGCTGACGCACGGCACAGGTGCGCACCCGCCAAGCAAAACACGTTGGTCTTTCTTTGAGACTCTGCAGTCCTCCTGAGTGAAGCCGTCATGGAGAAATCGAAAAACTTTCGAATTGACGCCTTGCTTGCCCATGAGACCAACCGTGTGAGCCGAGACCTCTCCCCCGGTCTGAGCAGCGACAGCCCAGCAGGCAGCCCGTTATCGTGCCGCCGCGCGGACACCCCGTCTCCGCGGGCCGCACAACTTCAAGGAATAATCCACAAACCGGGTGTCCTGAATCTCCCGCATCCAGGTCTCGCTTCAATCCCCGGCATGTATCATGCCCCTATGTACCCATTGTCCGCGTTGGGTGGACAGCACCCCGCGTTTGCATACACCGGTTTCACACAACTAACACAGACCTACCCAGAGCACCTAAAGGCAGCTGCCATGGCGGGATCTCTGCCCCTGGAGCACTGGATCCGCGCCGGTATCATGATGCCACGGCTACCAGATTACAGCAcGGGCCCTCAGTCTGGTTTGTTGGGGAAGTGCCGGAGGCCCCGCACCGCCTTCACCAGTCAGCAGCTGCTGGAGCTGGAGAACCAGTTTAAGCTCAACAAGTACCTGTCCAGACCCAAACGCTTTGAAGTGGCCACCTCCCTCATGCTGACTGAAACACAGGTCAAGATCTGGTTCCAAAATCGGAGGATGAAGTGGAAACGCAGCCGTAAGGCGAAGGAGCAATCCACCGCTTCTGCACCGTCTGAGTCCCAGCGACTACGCAGCGGAGGAAAAACAGCCACGGACAAACCTGATGAGAGCAGACGAGCTGTGAAACCAGACGATAGAGGGATTGATCTTGAGCTGGAGgatggagaagaggaggaagaggacgaggaggaggaagaggacgaggaggaagaagaggtggAAGCCCAGCATGGTTTTCCTATTGGGATGCCACGATCCACAGACTTCTTACAGCGTAGCACCGACATTGGCTACAATCCCCACAGCCCTTTCTCTGACGAGGAGCTGGAGGGGGTGCAGGTAGGAGGAGGTGACAGGAAGATCGGGGCAGGACTGTGAACAGACTCTCAGGAAATGCCGCTTTGGTTTCCTGAGTGTTACAGAGACATTCCACTGGGACATTACTGTGTTTGTGGTCACTAGAGAAGACAATTTACGGTAACATTTtatttgaaggtatctacataagagtgacatgacgctgtcatgaacacatgaaccctaactctacccctaactctaaccctaaccctaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37857 lncRNA upstream 7781 19156597 ~ 19156813 (+) True G28465
TU37790 lncRNA upstream 52907 19109918 ~ 19111687 (+) True G28409
TU37789 lncRNA upstream 60938 19103360 ~ 19103656 (+) True G28408
TU37788 lncRNA upstream 61519 19102717 ~ 19103075 (+) True G28407
TU37787 lncRNA upstream 62805 19101053 ~ 19101789 (+) True G28406
TU37865 lncRNA downstream 21305 19190118 ~ 19191162 (+) True G28473
TU37867 lncRNA downstream 22959 19191772 ~ 19193265 (+) True G28474
TU37873 lncRNA downstream 27933 19196746 ~ 19198227 (+) True G28479
TU37890 lncRNA downstream 61142 19229955 ~ 19230628 (+) True G28492
TU37927 lncRNA downstream 154219 19323032 ~ 19344125 (+) True G28526
XM_039794968.1 mRNA upstream 31782 19126889 ~ 19132812 (+) True stk16
XM_039794969.1 mRNA upstream 33251 19126880 ~ 19131343 (+) False stk16
XM_039794964.1 mRNA upstream 41054 19113966 ~ 19123540 (+) True LOC120555834
XM_039794966.1 mRNA upstream 41054 19113966 ~ 19123540 (+) False LOC120555834
XM_039794965.1 mRNA upstream 41054 19113966 ~ 19123540 (+) False LOC120555834
XM_039794307.1 mRNA downstream 5379 19174192 ~ 19181908 (+) True atic
XM_039795468.1 mRNA downstream 68432 19237245 ~ 19256129 (+) False rbms1a
XM_039795467.1 mRNA downstream 68439 19237252 ~ 19256129 (+) True rbms1a
XM_039794947.1 mRNA downstream 92478 19261291 ~ 19274747 (+) False itgb6
XM_039794948.1 mRNA downstream 94835 19263648 ~ 19274747 (+) False itgb6
TU37478 other upstream 596114 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 1421860 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3678173 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3718202 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 5926775 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 318433 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 328925 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 329280 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 343543 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 1542291 20711104 ~ 20761147 (+) True G28770

Expression Profile