RNA id: XM_039794263.1


Basic Information

Item Value
RNA id XM_039794263.1
length 1723
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC120555520
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 13723593 ~ 13727470 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTTCTGTGTTCCAAATAGTTCCGACTCACTAACAGTCAACTTCAGTCAATGGCTCCTTCACAAGTTTCTGGTATGATGATGAGGAATCTTGTTTTTGGGGTCATTCTTGGACTTCTCGCTGTTGTCCACTCAACACCTGTTAACACTGTAACCCAGATCCCCACCAAAGATGAGGATGAAGTTTTCAAAGAGGCCGTGACAGAAGGCTACCTTGTCGAACCCTATTTCATCAGGTTGCTCACAACTGAATCACCCAAAAGAAACACAAGCGTTAAGGCATCCACCCAGAAGCTGTCCTCTGACTCCAAAGAGAGGGACATGATTGAAGGCAGTGCTGCGGGGGACACCAACGACAAGACATCCATGTTCCTCCAGTTTGCAACCACAACTCCGAGTGTTTCACACGTTCAGAGCTCTGCCTCCACAGTATTGACAAGGGACACTGTCCATTCCAGTCCAGATCCAGCCACCAGCCGAAGCCATCAGTCTAGCTTTACCTCTTCATCAGTGCCAAGTAAAGCCCGGTCAAGCGTAACCCTAGACCAAATCTCAGTCTCTCTAACTACTTACCCAGCTGTCTCCACCTTTGACTTCCTGAGCACCCAGAGTTCTGATTTAGGGTCTGGAGATGGAGAAATGCTTGGCCAGTACTCTACTACAACCTCCAGTACAACGTCTAGCTCTAACACAGACACTAGCGCTGCATCATCAACCTCCACGGCAGCTTTTATCAGACCAAAGGCTCCAGTAACGTTTGCCGGAAGTGAAGGATCAGGCGAAGGATCAGGAATGGAGTTCAGTACAGTGTCAAGCAGTACTGGAGAAAAACTAAGAGCTGTGCAGCATGCAATACTCAAAGATGTTCAAAACCCACTCAAAGTGGATCAAGACATTGTTCTGGGACCCAAGAACAAAGAACACAGTACGCCAGGTTGGATCATGATCCTTGCTTTAATGGTTGGTTTTGCAGCACTGGTAATGGTCTTTGTTGCCCTCGCTACCAGAAACAAATGGAGTGGACCACGCCATGCATCCCAGATCGAGACCAAAACTAACTTCTCAAACCAGCAGATGGGGCTAGAGATGGAGACATTCCTGCACAAAGACGAGCTCTTGGTGAATGGAAAGGCAGGAGATTACACAGTCATCCCCCTGGATGAGATTCCAGAGAAAGATTCATCACACTGAAGTTCAGAAACAGACCCTCTGGCTAATTTGAGGCTTTGAGACTCATCACAGAACCACAAGACTGTGTTGGAAGCAAATGGTTTTGATCCGAGGAACAAAACTGTCGGGGCTGTTGAGCAAAAGTTTTCTGTGGACTTTCACATCTCTGAGCCCAGTGTGAACCACAACCATGATCCGGCTTTTCCTGCTGACTTTCAAGAACTCTTATAATAGCTTTACTTTGAAACTAATATTTTGGTTGATGAATGTATTGCCATATCTGCTCTTGTATTAAGTGTAAAATACAAAACTAGTTGGGTAGGAATCACAAATGCcatttatttcaaacaaaatctcagtgttttattttctttttttttaattattgtaaataatgtcttttttttaactctatGTGGATACATGAACATGATCCTATGTGCAGTCTGGTGGAAATGTCTTTTTAAGGTGTCTTTGTTGTGTTAAAAATCACTTTGTAAAATCATTATTGATGACTATGTTGTTGATTGTAAATTATATGAAGCTATTCTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36260 lncRNA downstream 2997 13719198 ~ 13720596 (-) True G27211
TU36258 lncRNA downstream 11325 13708919 ~ 13712268 (-) True G27210
TU36253 lncRNA downstream 26760 13695578 ~ 13696833 (-) True G27208
TU36251 lncRNA downstream 29345 13693745 ~ 13694248 (-) True G27206
TU36250 lncRNA downstream 33996 13689282 ~ 13689597 (-) True G27205
TU36279 lncRNA upstream 26236 13753706 ~ 13754074 (-) True G27230
TU36332 lncRNA upstream 269643 13997113 ~ 14004611 (-) True G27277
TU36334 lncRNA upstream 274380 14001850 ~ 14002747 (-) True G27279
TU36357 lncRNA upstream 440087 14167557 ~ 14167758 (-) True G27295
TU36359 lncRNA upstream 442143 14169613 ~ 14169839 (-) True G27297
XM_039796044.1 mRNA downstream 316978 13402324 ~ 13406615 (-) True chst1
XM_039794264.1 mRNA downstream 429332 13285241 ~ 13294261 (-) True LOC120555522
XM_039795200.1 mRNA downstream 475177 13240686 ~ 13248416 (-) True pdcd7
XM_039795644.1 mRNA downstream 485341 13208329 ~ 13238252 (-) True ubap1lb
XM_039796072.1 mRNA downstream 524957 13188414 ~ 13198636 (-) True rasl12
XM_039795130.1 mRNA upstream 240244 13967714 ~ 13995315 (-) True hsd17b12b
XM_039795129.1 mRNA upstream 240244 13967714 ~ 13995313 (-) False hsd17b12b
XM_039794845.1 mRNA upstream 290082 14017552 ~ 14048294 (-) False ttc17
XM_039794844.1 mRNA upstream 290082 14017552 ~ 14048293 (-) True ttc17
XM_039794175.1 mRNA upstream 334566 14062036 ~ 14090460 (-) True trpm5
XR_005638877.1 other downstream 434329 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 627827 13069996 ~ 13095766 (-) True G27075
TU35932 other downstream 1418769 12304539 ~ 12304824 (-) True G26924
TU35894 other downstream 1761821 11960701 ~ 11961772 (-) True G26891
TU35842 other downstream 2054324 11643571 ~ 11669269 (-) False LOC120555651
TU36388 other upstream 742288 14469758 ~ 14470345 (-) True G27321
TU36517 other upstream 1115243 14842713 ~ 14843905 (-) True G27420
XR_005638870.1 other upstream 1912299 15639769 ~ 15639960 (-) True LOC120556584
TU37150 other upstream 3780653 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 3782480 17509950 ~ 17513168 (-) False G27925

Expression Profile