RNA id: XM_039794265.1


Basic Information

Item Value
RNA id XM_039794265.1
length 6834
RNA type mRNA
GC content 0.53
exon number 29
gene id LOC120555523
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19459171 ~ 19495413 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGGTGAAGCAATCCTTAATTGGACTCCGCGTGTAAATGGTCTTTCACCAGCTTCCTGTGGATTTATGTGAAGACATGCAGGCATCAAAGAAGACTTAAGAGCAGGCAGTATAGGCTGCGAAGCAACAGCCCAGCTATGTTCAGAGCAGTGTTTGGAAACAAGAAAGatggaggaggaaaaggaggagaaaaaaagaataagggACATCCAGGTGGTGAGGTGTACACTCACAGCACCTTGCAGAGGGGAAGTGCCGGGCGTGCCAAACACTTCCGGGACCATGACAGTGGCTACACTGAAAGCCCGGTAAAACCGAGGAAGAGACTGACCAAGGTTGCGTCCATTTCTTTACCGTCCTCCCCGCTTCTCCCTCGCCAGGCCGACATAGTTCCCTCCCAGTCGTGCATCAAGTTCACAGGACGGGTAAGGAAGCTGGAGTTTGTGGATGGCTCTTCCAACGCGAGAGAACCTCTTGTCTTTGCCTCGTGCCGTGGCAAGACAGACCACAGAGACCTCCACGTGGAGCCCCAGCCGGGCTCCTCCCTTTCTACCCAGGAACTGATGACCAGACTATGCTTCTTATTGGGAGAAGCAACGCCCGGCACTGCTAGCTCTCCTATGGAGGACAGGAGGGAAAAGAAGTGTGATACCTCTGCCCAGGGGGGGAGTCCCAGCTCCACTCTTACCTGCAGCACTGCCTCCCCCTGTTCAGAGAGCCCCTCTTCCACCCTGAGCactagtgctggaggccagccTTTTCCCCAGCCTTTACCCTTACCTTCACCCCACTGCAGCTCCAGCACCAGCCCCAGTGGAACCCTCTCCAACTCCGTACCCAGTTCTGCTCCTGGACCCATCACCAGGAGCAGCCCTGGGCCTCCTTCTCAAAGCCCCACCTCCACCCTGGGGAGCAAGGACAGTGGAATCATAGCAACCATCACTAGTTCCTCTGAGAATGAAGAGCGCGGCGCCTCTAGTGAGGTTCTGACTAGGAATAAAAGCCCAGGGGGCGGTGCTGGTGTAATGGGCCATGCAAACGAGGACCGCCATCCCGGGCCAACAAGGGACAACCTGACCACCCAACCAGATGAGGCCTTACCTAGAACTGACATCATGGAGCCCAGGACTCCACCAGCACCGAAAAGACCCCTCCCACAGCACCACCTACACAGCACTTCCTCCCTTGTGATGCCCCGTCCAAATTCTGTGGCAGCAACCAGCTCCACTCGACTGGACGATTTGAGTTATCTGGACAACCACAGGGCTGCTGGACACAGGAGCTCCGTCCgcaaacacaacacagctgGACGCACAAATGATGACTCCAAAGGGAGATTAGTGCCATTCAAACAAGCTGACATCATGCTAAAACCGCTGCTGTTTGAAGTCCCCGGCATCACCGCAGAGACACCTTTTGTTGGCCGGGATTGGCTCTTCACACGTCTGGAGGAGGTCCTGAGAAAAACAAGCAGCTGTGAGGGCCGCGGTGCCGTCATTGTGGGTAACGCAGGATCCGGCAAGACTGCTATCATCTGGCGGTTGGTGACGCTCAGCTGTCATGCCATGCACACGCCACAGGGAGGTCCCAGCATCCCTCACAGCCCCAGCACCTCCCCTAAATGTGGGGATAAGCAGGGAAAAGCCGCCTCCAAACCAGCTGATTCCCAGCTTAACCAGAGTGCTGTTGCAGGAACAAGTGATGCAGCACAGAGGAAGGAGGTTGTCAGATGCCTAGCTGCCAAGGTGGTAGCCTATCATTTCTGCCAGGCTGACAACACCTACACCTGCCTGGTACCAGAGTTTGTGCACAGTGTCGCCGCCCTATTGGCCAGAGCGCCACAGCTCGCCCCGTACAGGGAGCTGCTGGTACAAGAGCCTCACCTACAAAACACACTCAGCCTGCGATCCTGCGTTCAAGACCCCATTGCTGCCTTCCGAAAGGGCATCCTGGAGCCCATAGCCAGCCTGCGCAAGGAGCGCAGACTACCTGAAGAAGACTACATCATATTGGTCGACAGCCTTAATGAGGCAGAATTCCATAAACCAGACTATGGGGACACCATTGCCACTTTCATTaccaaaataatctcaaaatttCCCATCTGGCTGAAGTTGGTGGTCACGGTCAGGACAGGCCTGTTGGAAATCACTACACTTCTTCCCTTCTCTGGCATCTCTCTGGACATCCTGCCAGACAGCAGTGATCTGGGAGCTGACCTGAGTGACTACATCCATCACCGGGTCAGCAGCAGCACCCAGGTCGCCGCTAACGTCACCACACCCACAGGCTCGGCCCCTGATCAGCTGCTCCTCAGCAAGTTCAGCAGCCACCTGTCAACACGGAGCAACGGCTCCATCCTCTACCTTCAGCTGACCCTGGATCTGTTTCACAAGGGGCACCTGGCTCTGAAAGGTGGAAACTACCTGGTGGTGCCTGTGTCGCTGTCAGAGGTGTACCTGCTGATGTGTCACGTGAGCTTTCCGGATAAAGAGGTCTTTGAACGGGTACTTCCGGTGCTAAATGTGGCACTGGCGTCTCTGCACCCACTGACTGATGAACAAATGTTCAGGGCGCTGAATGCAGGCAGTGTGAGGGGGGAGCTGGAGTGGAAAGACTTCCAGCTGAGATTAGACAGCCTGGCTGGATTTATGGTGAGACGTAGGGATGGCACCCGGATGCTGTGTCATCCCTCCTTCAGAGAGTGGCTGGTTTGGAGAGCAGATGGAGAGAGCAGTGACTTTCTCTGTGAACCTAGGAGTGGCCACGCTCTCCTGGCCTTCATGTTCTCCAGACAGGAGGGCAAACTGAACCGGCAGCAGACAATGGAGCTGGGACACCACATCCTCAAGGCTCACATATTCAAGGGTCTGAGTAAGAAgacaggtgtgtcctccagcgTTCTTCAGGCAATGTGGGTGAACTGCAGTACAGACAGTCTGTCCGCTGCGCTGGCCTCCCTGAGGAACCTATATACACCTAACATCAAGGTAAGTCGTCTGTTAATGCTAGGTGGCGCTAGCGTGACCTGGTGTACAGAGGTGGTTGGACATGCCCCAATTCTGGCCGTCCACGCCCACCTGGGGCATGTGGAGATGGTAGCTCTGCTGCTTGAAATGGGCGCGCCAGTAGATGGGACTACTGACAGTGGCATGACGCCCCTCTGTCTGGCCGTCGCTGCAGGACACGTCGACATCGTCAGCCTGCTCTGCAAAAAAGGGGCCAAGGTGGGCCTTGCTGATAAGACTAGCCAGTGTGCGCTGGTCCATGCTGGGCTGAAGGGCCATGCAGAAATCATCAACATCTTGCTGGGCCAGGATTGGGGAGCAGATATCCCCACTGACCCACAGCAGCACCACAGCAATGAAACTGTGACTGGGAAAACACAGGCAGCACAGCAGGCGATTACAGCCGCAGCTAGTGtgggacacacacagGTGGTGAAGAACTTGCTGGACTTGAAAGATGAACAGCTGGCAGTGCAGATGGACGCTCACGACTCTCTCTGGGGAGAAACGGTGCTGAGCGCGGCAGCAGGAAGAGGGAGGATGGAGGTGTGCGCGTTCCTCCTGGAGCGGGGGGCAGGGCTGGAGATACCCAACCGCAGGGGGATGGTCCCGCTGCTTAGTGCCAccaaacatggacacacacagATTGTAGAGTTGCTGCTAAAGCAAGGTGCCGATATTAATGCCACCGAAAAGCAGGGTCGCAATGCACTGATGCTGGCTGCCTCTGAGGGCCACGTGAGCACTGTTGAACTCCTGCTGTCAAAGGgtgcctctctctcctctgccgaTCAGGATGGGCTGACTGCACTTAGCTGGGCCTGTATGAAGGGCCAGAAAGATGCAGTGCAGCTTCTGGCAGAGGCAGGCGCAGACCTGAACCaaccagacagacagggacGGACTCCTCTTGACCTCTCTGCCCTTAACGGGGATGCAGATACAGTGCATTGCCTGGTGGAACATGGAGCGGTGCTGGAGAGAGCCGACAACAACAGTACCAGAGGTTCAGATCGGACGACTGGCTGCCAGAATCCGACTCTGGTGGCTTCGGTGCTTAAGAAAGGATCCAAGATGGGCTACAAAACGGCTCCACACGATCGATCAGGTCATGCTACGTGGGCTATGGCTTCCTCCAAACCAGACATTCTCCTCATCCTGCTGCAGAAGCTGATGGAGGAAGGGAACATGCTTTACAAGAAGGGACGTATGAAGGAGGCAGGCCAGCGTTATCAGTATGCCCTGAGGAAGCTACCTCGTGAGGGGCAAGGAGAGGAGCTGAAAGGGCTCAAAGACCTGCGGGTCTCCCTCTTTCTAAACCTATCCCGCTGCCGCAGGAAAACCAATGATTTTGGCATAGCTGAAGAGTTTGCAACAAAAGCCCTGGAACTCAAACCCAGGTCTTATGAAGCGTATTATGCCAGAGCGCGTGCCAAGAGGAGTAGCAGGCAGTTTGCTGCAGCGCTGGCAGACCTCCACGAAGCAGCACGACTCTCCCCGTCCAACCGGGAGATCCGGCGCCTGCTGGTCCGGGTAGAGGAGGAATGCAAACATCATCAGAAGGCATCCATCAACAACATGGCACAGGGTTACAACAGGgacccacacacccaccaccATCAAGCCGCAGAGGAGGAGGTCGACATCTATTCACAGGGAAGTCTAGAGAGGCAAGTCCCCGCAGAGCACACTGATgtagagaaggaggaagagaaggaggaaggcGAGGAGGCGAGCCTGCAGTGTGGGAAAAGTCCAGAATTTTGGCCTCTGAATCCGTACGGTCCAAACAGGACTCTCCCTGGAGGTTTGGCCTTTGGTCCAACAGATCAGTTGCCATGTTTCCCACAAGAGGAATATGTGCAGAACCAACTGTTTGTGGACATGCCCGAGTCTGTTCCTGTGATCAACAGGCAGACCCAGAACCAGGGACTCAGCAGGACTCATCACCACTGCCACTCCCTCCAGTCAGGGAGCAGAGTTGGGGGCaggcctctctctctgtgtggccCCTCCAGTCCTCTGCCAGGCAGACACATCTCCACCTCCCTAAGGCCTGCACCGGTGCTGGGTATTGACATCGGCCATGGATTAGCCAACGAACACTCTGGACACAGCCCGACTGAGCTCTATCACCCCATGTCCCCTAACAGCTCCTCCCCACCTGGGCCACTCCAGATGTACCAGCCCCGACCCTCCGGCTTCTCCCGGGGCTCCGAGAGACTCTCCAGCCACTCTGGGGCTCTGGATGGCCTGGCTCTCGCTCTGGGGTCTGGTATGGAGGTTAGGAGGGagggtggtggaggaggaggaggaacagcAGGCTCAAGGGGCTCCAGCTCCAGTCAGGCCTCCAGTGGGAACCTGTCAGACGGCGGCAGGCAGCAGGTGCCGGACGCCCCGTGCCCCATCAAGAGCAGCGGTAGCTTCAAGTCCAAACCAGAGCTAAAGCCCCGACCCTTCATGGGAGTAATGGACAAATCAGTGCGAGTCCAGGGCCAGCAGACCTCCGGCCTGAGCCGACAGGGACAGGGAGGAGGGCTGGAGAGTTTCAGTATGTCAGTAATGGAGTTTCAAGGGCTAAACAATGAATTCAAATGCCCGTCATTCCAGGAGCAGCTTTCTGTAAGTCAGGCCAACAGCCAGCAGCAGGGCCGGGAGTTTGGAGAGCGGCTCCACCAGCGAGAGGCTAGAGGCAACGCGTCCTCCCAGCTACGCTTCCCTGACGGGAGGCACAGACAGGCGAGTCTAACGAGAGACAACCCGGCTCTGCACATGGCTCCGATCAAACCCAAGCGCTCATTTATAGAGTCCAACGTCTGAATATATTACTTTATAAAAGCACAGACACAGGCTGTTTTCAAGAAACTATGTCCCACATAAGGTAGCAAGGGAGACTGGTTTGAGAACAGCTCCCTTCCCTGAGCCTGTTTTGTAGAGTTATGCTGCTGCACTGCATTTACAATCTAGAACCAGTGTTCAACTCAGGCTACTATGCTTTTGCTTACATGTCTACAGCTACACTAGTGTATTGAAGAAAACCAGACATACCTTAAGTAGGGATTTCAAAAAATGAGTAGAATATTGTCTCaacttttaatttattataacaAATATAGAAATCAGAGAAAGCTTTGTGCACAAATATAAAAAACCTCATGCTATTAGTTGCTGGATATGACCATTTCTATTGTCAAGtgtcttttaaaaaacatttatatttgtACGGTGTACACTATATTTGCAGATTATATATTTCCCTGTAAGTGGTTATCTGTCTGCATTACAGGCTTCAAAAGAAATTACTTTGTGTGCTTGAGATTCTTTTTCTTGGTACAATTTGATTAAAAAAGGAGCTGTACATGACATTGTTGGAAAACTTCTTATCATAATCTAATATTGAATTGATTGCTTCAATACTTACAGTATATGCTATTTATTTTTGCATAGCAGAGAACATATTCATATGAAATGTTTACTGGTTTGTttggagagcgagagagagacagagagagacacggAGAGAGCTTTTATACAAGCAGCAGTTGAGGATAGAAAATCTTAAGAGACTTCGTACTTTGCTGTATGTCCATAGTTGTCATATACCCTTTTCAGAGTCATACTACAGATTACAGAATGTTGCCACATTATTATTGTggtataataaaatattaatgGGTACCACATTTCTACATCTACTTCTTTCACTGTATAATCCATAAAATGTTGCCTAAGCTGTGTATGGATGGATAAAAGGATTCACAGTACAACCTAACTCTAAACTGACATTTAACCACGCCATCAGAATAAAGTACTTGTATAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37984 lncRNA downstream 23458 19434943 ~ 19435713 (-) False G28558
TU37983 lncRNA downstream 23956 19420548 ~ 19435215 (-) True G28558
TU37981 lncRNA downstream 40736 19417412 ~ 19418435 (-) True G28557
TU37975 lncRNA downstream 49669 19351997 ~ 19409502 (-) True G28552
TU37963 lncRNA downstream 127656 19330490 ~ 19331515 (-) True G28545
TU38063 lncRNA upstream 34159 19529572 ~ 19531634 (-) True G28623
TU38073 lncRNA upstream 54714 19550127 ~ 19551890 (-) True G28632
TU38083 lncRNA upstream 62265 19557678 ~ 19559314 (-) True G28637
XR_005638844.1 lncRNA upstream 78906 19574319 ~ 19600624 (-) True LOC120556360
TU38116 lncRNA upstream 428322 19923735 ~ 19923998 (-) True G28670
XM_039794294.1 mRNA downstream 100804 19343424 ~ 19358367 (-) False marchf7
XM_039794290.1 mRNA downstream 100804 19343424 ~ 19358367 (-) False marchf7
XM_039794293.1 mRNA downstream 101019 19343424 ~ 19358152 (-) True marchf7
XM_039796053.1 mRNA downstream 226331 19227639 ~ 19232840 (-) True psmd14
XM_039794306.1 mRNA downstream 251528 19182528 ~ 19207643 (-) False fn1b
XM_039794272.1 mRNA upstream 5116 19500529 ~ 19508532 (-) False gtf2f2a
XM_039794271.1 mRNA upstream 5116 19500529 ~ 19508532 (-) True gtf2f2a
XM_039796201.1 mRNA upstream 13272 19508685 ~ 19511713 (-) True gpalpp1
XM_039796124.1 mRNA upstream 758300 20253713 ~ 20279186 (-) True LOC120556479
XM_039795473.1 mRNA upstream 980214 20475627 ~ 20497725 (-) False tdrd3
TU37839 other downstream 332795 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other downstream 332795 19123566 ~ 19126376 (-) False LOC120555836
TU37831 other downstream 397021 19059755 ~ 19062150 (-) False LOC120555695
TU37697 other downstream 739152 18719372 ~ 18720019 (-) True G28345
TU37603 other downstream 1038672 18417978 ~ 18420499 (-) True G28269
TU38446 other upstream 2085629 21581042 ~ 21583498 (-) True G28933
TU38813 other upstream 3382218 22877631 ~ 22889042 (-) True G29209
TU38861 other upstream 3420441 22915854 ~ 22919554 (-) False dpep1
TU38988 other upstream 3804129 23299542 ~ 23310746 (-) False spi1b
TU39182 other upstream 4417942 23913355 ~ 23958933 (-) False apba2b

Expression Profile